ViewGene

Locus Name:
GeneID:
Location:

GeneID:285
TrivialName: PA14_25080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25080
PAO1 Ortholog Locus:PA3014
Sequence Length:2148
Protein Length:715
Start: 2192750
Stop: 2194897
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06402.1|AE004726_8 (AE004726) fatty-acid oxidation complex alpha-subunit [Pseudomonas aeruginosa PAO1]
Identities = 715/715 (100%), Positives = 715/715 (100%)
Sequence:
ATGATTTACCAAGGTAAAGCCATCACGGTTAAGCCTCTTGAGGGCGGCATCGTCGAGTTGAATTTCGATCTC
AAGGGCGAGTCCGTCAACAAGTTCAACCGTCTCACCCTCAGTGAGTTGCGTGCGGCAGTCGATGCGATCAAG
GCCGATGCATCGGTCAAGGGCGTGATCGTGACCAGCGGAAAGGACGTGTTCATCGTTGGTGCCGACATCACC
GAGTTCGTTGACAACTTCCAGCTGCCCGACGAGGAACTGATGGCGGGCAACCTCGAAGCCAACAAGATCTTC
AGCGACTTCGAAGACCTGGACGTACCCACCGTTGCCGCGATCAACGGCATCGCCCTCGGCGGCGGCCTGGAG
ATGTGCCTGGCCGCGGACTTCCGCGTGATGAGCGCGACCGCCAAGGTCGGCCTGCCGGAAGTCAAGCTGGGC
ATCTACCCGGGCTTCGGCGGCACCGTCCGCCTGCCGCGCCTGATCGGCTGCGATAACGCCGTCGAGTGGATC
GCCTCGGGCAAGGAAAACAAGGCCGAGGACGCCCTGAAGGTCGGCGCCGTCGACGCCGTGGTCGCTCCCGAG
CAACTGCAGGCCGCTGCCCTCGACCTGGCCAAGCGCGCCGTCGCCGGCGAGCTGGACCACAAGGCACGGCGC
CAGCCGAAGCTGGAAAAGCTGAAGCTGAATGCAATCGAGCAGATGATGGCCTTCGAAACCGCCAAGGGCTTC
GTCGCCGGCCAGGCCGGTCCGAACTACCCGGCGCCGGTGGAAGCCATCAAGAGCATCCAGAAGGCCGCCAAC
TTCGGCCGCGACAAGGCGCTGGAAGTCGAAGCCGCCGGCTTCGTCAAGCTGGCCAAGACCTCGGTCGCGCAG
AGCCTGATCGGCCTGTTCCTGAATGACCAGGAACTGAAGAAGAAAGCCAAGAAATACGACGAAGTCGCCAAG
GACGTGAAACTGGCCGCCGTGCTCGGCGCCGGCATCATGGGCGGCGGCATCGCCTATCAGTCGGCGCTCAAG
GGCACCCCGATCCTGATGAAGGATATCCGCGAAGAGGGTATCCAGATGGGCCTGAACGAGGCCGCCAAGCTG
CTCGGCAAGCGCGTCGAGAAGGGTCGCCTGACCCCGGCGAAGATGGCCGAGGCGCTCAATGGCATCCGTCCG
ACCATGTCCTATGGCGACTTCGGCAACGTCGACATCGTCGTCGAAGCCGTCGTCGAGAACCCCAAGGTCAAG
CAAGCCGTGCTCGCCGAAGTGGAAGGCGCGGTGAAGGAAGACGCGATCATCGCCTCCAACACCTCGACCATC
TCCATCAGCCTGCTGGCCCAGGCGCTGAAGCGTCCGGAAAACTTCTGCGGCATGCATTTCTTCAACCCGGTG
CACATGATGCCGCTGGTGGAAGTGATCCGTGGCGAGAAGACCGGTGAAACCGCCATCGCCACCACCGTCGCC
TACGCCAAGAAGATGGGCAAGAGCCCGATCGTGGTCAACGATTGCCCCGGCTTCCTGGTCAACCGCGTGCTG
TTCCCGTACTTCGGCGGCTTCGCCAAGCTGCTGAGCTTCGGCGTCGACTTCGTGCGCATCGACAAGGTGATG
GAGAAGTTCGGCTGGCCCATGGGCCCGGCCTACCTGTCCGACGTGGTCGGCATCGACACCGGCCACCATGGC
CGCGACGTCATGGCCGAGGGCTTCCCGGACCGCATGGCGGTCGAGGGCAAGACCGCCGTCGACGTGATGTAC
GAGGCCAACCGCCTGGGCCAGAAGAACGGCAAGGGCTTCTACGCCTACGAGACCGACAAGCGCGGCAAGCCG
AAGAAGGTCACCGATCCGCAGGCCTACGAAGTGCTCAAGCCGATCGTGGTCGAGCAGCGCGAAGTGACCGAC
GAGGACATCGTCAACTTCATGATGATCCCGCTGTGCCTGGAAACCGTGCGTTGCCTGGAGGACGGCATCGTC
GAGACCGCTGCCGAGGCCGATATGGGCCTGATCTACGGCATCGGCTTCCCGCCCTTCCGTGGTGGTGCTCTG
CGCTACATCGATTCGATCGGTGTCGCCGAGTTCGTGGCCCTGGCCGACAAGTACGCCGAGCTGGGCGCGCTG
TACCACCCGACCGCGAAGCTGCGTGAAATGGCCAAGAACGGTCAGAAATTCTTCGGTTAA
Translation:
MIYQGKAITVKPLEGGIVELNFDLKGESVNKFNRLTLSELRAAVDAIKADASVKGVIVTSGKDVFIVGADIT
EFVDNFQLPDEELMAGNLEANKIFSDFEDLDVPTVAAINGIALGGGLEMCLAADFRVMSATAKVGLPEVKLG
IYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAKRAVAGELDHKARR
QPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFVKLAKTSVAQ
SLIGLFLNDQELKKKAKKYDEVAKDVKLAAVLGAGIMGGGIAYQSALKGTPILMKDIREEGIQMGLNEAAKL
LGKRVEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTI
SISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVL
FPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMY
EANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKPIVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIV
ETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAELGALYHPTAKLREMAKNGQKFFG*
AnnotationID:295GeneID:285
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:46
Gene Name:foaA
Confidence Code:2
GeneProduct:fatty-acid oxidation complex alpha-subunit
Cell Localization:()
Synonyms:fadB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1250,pfam02737
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:4.2.1.17
Status:ACTIVE
Pathway:
Homology:
>gb|AAK18167.1|AF290949_1 (AF290949) FadB [Pseudomonas putida]
          Length = 715

 Score = 1251 bits (3237), Expect = 0.0
 Identities = 630/714 (88%), Positives = 675/714 (94%)

>gb|AAN67749.1|AE016406_4 (AE016782) fatty oxidation complex, alpha subunit [Pseudomonas
           putida KT2440]
          Length = 715

 Score = 1251 bits (3236), Expect = 0.0
 Identities = 628/714 (87%), Positives = 676/714 (94%)

>gb|AAN53108.1|AE015454_2 (AE015454) fatty oxidation complex, alpha subunit [Shewanella
           oneidensis MR-1]
          Length = 716

 Score =  878 bits (2269), Expect = 0.0
 Identities = 450/715 (62%), Positives = 541/715 (75%), Gaps = 2/715 (0%)
Structural Features:
COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
CD-Length = 307 residues,  99.0% aligned
Score =  317 bits (815), Expect = 2e-87
Identities = 136/312 (43%), Positives = 186/312 (59%), Gaps = 9/312 (2%)

pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
CD-Length = 185 residues, 100.0% aligned
Score =  239 bits (611), Expect = 8e-64
Identities = 98/185 (52%), Positives = 127/185 (68%)
Genomic Context:
Comment:
ReferenceID:573
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17715
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36034
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:285_cdd.html
URL:
ReferenceID:36478
Author/Investigator(s): Nakahigashi K, Inokuchi H.
Title: Nucleotide sequence of the fadA and fadB genes from Escherichia coli.
PubMed: 2204034
MedLine:
Source:
Nucleic Acids Res. 1990 Aug 25;18(16):4937.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2204034
ReferenceID:36481
Author/Investigator(s): DiRusso CC.
Title: Primary sequence of the Escherichia coli fadBA operon, encoding the fatty acid-oxidizing multienzyme complex, indicates a high degree of homology to eucaryotic enzymes.
PubMed: 1699931
MedLine:
Source:
J Bacteriol. 1990 Nov;172(11):6459-68.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1699931
ReferenceID:36482
Author/Investigator(s): Yang XY, Schulz H, Elzinga M, Yang SY.
Title: Nucleotide sequence of the promoter and fadB gene of the fadBA operon and primary structure of the multifunctional fatty acid oxidation protein from Escherichia coli.
PubMed: 1712230
MedLine:
Source:
Biochemistry. 1991 Jul 9;30(27):6788-95.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1712230
Homologs By Global Alignment
Gene ID:285

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
470 PA3014_tr translation of PA3014 715 99.99 99.99 0 3618.0
24454 gb|AAG06402.1|AE004726_8 (AE004726) fatty-acid oxidation complex alpha-subunit [Pseudomonas aeruginosa PAO1] 715 99.99 99.99 0 3618.0
24455 gb|AAK18167.1|AF290949_1 (AF290949) FadB [Pseudomonas putida] 715 88.11 94.40 0 3237.0
24456 gb|AAN67749.1|AE016406_4 (AE016782) fatty oxidation complex, alpha subunit [Pseudomonas putida KT2440] 715 87.83 94.54 0 3236.0
24457 gb|AAK83058.1|AF288535_1 (AF288535) FadB [Pseudomonas oleovorans] 715 87.83 94.40 0 3233.0
GC ORFID: 43287How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3014Glimmer Score:
Start: 2761177Stop: 2759030
Length: 2148
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3014 translation of PA3014Homolog Bit Score 1398.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8044 (ORF: BLASTX 1241.0), t_PA3014 (ORF: GLIMMER)
GC ORF Sequence
ATGATTTACCAAGGTAAAGCCATCACGGTTAAGCCTCTTGAGGGCGGCATCGTCGAGTTGAATTTCGATCTC
AAGGGCGAGTCCGTCAACAAGTTCAACCGTCTCACCCTCAGTGAGTTGCGTGCGGCAGTCGATGCGATCAAG
GCCGATGCATCGGTCAAGGGCGTGATCGTGACCAGCGGAAAGGACGTGTTCATCGTTGGTGCCGACATCACC
GAGTTCGTTGACAACTTCCAGCTGCCCGACGAGGAACTGATGGCGGGCAACCTCGAAGCCAACAAGATCTTC
AGCGACTTCGAAGACCTGGACGTACCCACCGTTGCCGCGATCAACGGCATCGCCCTCGGCGGCGGCCTGGAG
ATGTGCCTGGCCGCGGACTTCCGCGTGATGAGCGCGACCGCCAAGGTCGGCCTGCCGGAAGTCAAGCTGGGC
ATCTACCCGGGCTTCGGCGGCACCGTCCGCCTGCCGCGCCTGATCGGCTGCGATAACGCCGTCGAGTGGATC
GCCTCGGGCAAGGAAAACAAGGCCGAGGACGCCCTGAAGGTCGGCGCCGTCGACGCCGTGGTCGCTCCCGAG
CAACTGCAGGCCGCTGCCCTCGACCTGGCCAAGCGCGCCGTCGCCGGCGAGCTGGACCACAAGGCACGGCGC
CAGCCGAAGCTGGAAAAGCTGAAGCTGAATGCAATCGAGCAGATGATGGCCTTCGAAACCGCCAAGGGCTTC
GTCGCCGGCCAGGCCGGTCCGAACTACCCGGCGCCGGTGGAAGCCATCAAGAGCATCCAGAAGGCCGCCAAC
TTCGGCCGCGACAAGGCGCTGGAAGTCGAAGCCGCCGGCTTCGTCAAGCTGGCCAAGACCTCGGTCGCGCAG
AGCCTGATCGGCCTGTTCCTGAATGACCAGGAACTGAAGAAGAAAGCCAAGAAATACGACGAAGTCGCCAAG
GACGTGAAACTGGCCGCCGTGCTCGGCGCCGGCATCATGGGCGGCGGCATCGCCTATCAGTCGGCGCTCAAG
GGCACCCCGATCCTGATGAAGGATATCCGCGAAGAGGGTATCCAGATGGGCCTGAACGAGGCCGCCAAGCTG
CTCGGCAAGCGCGTCGAGAAGGGTCGCCTGACCCCGGCGAAGATGGCCGAGGCGCTCAATGGCATCCGTCCG
ACCATGTCCTATGGCGACTTCGGCAACGTCGACATCGTCGTCGAAGCCGTCGTCGAGAACCCCAAGGTCAAG
CAAGCCGTGCTCGCCGAAGTGGAAGGCGCGGTGAAGGAAGACGCGATCATCGCCTCCAACACCTCGACCATC
TCCATCAGCCTGCTGGCCCAGGCGCTGAAGCGTCCGGAAAACTTCTGCGGCATGCATTTCTTCAACCCGGTG
CACATGATGCCGCTGGTGGAAGTGATCCGTGGCGAGAAGACCGGTGAAACCGCCATCGCCACCACCGTCGCC
TACGCCAAGAAGATGGGCAAGAGCCCGATCGTGGTCAACGATTGCCCCGGCTTCCTGGTCAACCGCGTGCTG
TTCCCGTACTTCGGCGGCTTCGCCAAGCTGCTGAGCTTCGGCGTCGACTTCGTGCGCATCGACAAGGTGATG
GAGAAGTTCGGCTGGCCCATGGGCCCGGCCTACCTGTCCGACGTGGTCGGCATCGACACCGGCCACCATGGC
CGCGACGTCATGGCCGAGGGCTTCCCGGACCGCATGGCGGTCGAGGGCAAGACCGCCGTCGACGTGATGTAC
GAGGCCAACCGCCTGGGCCAGAAGAACGGCAAGGGCTTCTACGCCTACGAGACCGACAAGCGCGGCAAGCCG
AAGAAGGTCACCGATCCGCAGGCCTACGAAGTGCTCAAGCCGATCGTGGTCGAGCAGCGCGAAGTGACCGAC
GAGGACATCGTCAACTTCATGATGATCCCGCTGTGCCTGGAAACCGTGCGTTGCCTGGAGGACGGCATCGTC
GAGACCGCTGCCGAGGCCGATATGGGCCTGATCTACGGCATCGGCTTCCCGCCCTTCCGTGGTGGTGCTCTG
CGCTACATCGATTCGATCGGTGTCGCCGAGTTCGTGGCCCTGGCCGACAAGTACGCCGAGCTGGGCGCGCTG
TACCACCCGACCGCGAAGCTGCGTGAAATGGCCAAGAACGGTCAGAAATTCTTCGGTTAA