Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG06402.1| AE004726_8 (AE004726) fatty-acid oxidation complex alpha-subunit [Pseudomonas aeruginosa PAO1]
Identities = 715/715 (100%), Positives = 715/715 (100%)
Sequence:
ATGATTTACCAAGGTAAAGCCATCACGGTTAAGCCTCTTGAGGGCGGCATCGTCGAGTTGAATTTCGATCTC
AAGGGCGAGTCCGTCAACAAGTTCAACCGTCTCACCCTCAGTGAGTTGCGTGCGGCAGTCGATGCGATCAAG
GCCGATGCATCGGTCAAGGGCGTGATCGTGACCAGCGGAAAGGACGTGTTCATCGTTGGTGCCGACATCACC
GAGTTCGTTGACAACTTCCAGCTGCCCGACGAGGAACTGATGGCGGGCAACCTCGAAGCCAACAAGATCTTC
AGCGACTTCGAAGACCTGGACGTACCCACCGTTGCCGCGATCAACGGCATCGCCCTCGGCGGCGGCCTGGAG
ATGTGCCTGGCCGCGGACTTCCGCGTGATGAGCGCGACCGCCAAGGTCGGCCTGCCGGAAGTCAAGCTGGGC
ATCTACCCGGGCTTCGGCGGCACCGTCCGCCTGCCGCGCCTGATCGGCTGCGATAACGCCGTCGAGTGGATC
GCCTCGGGCAAGGAAAACAAGGCCGAGGACGCCCTGAAGGTCGGCGCCGTCGACGCCGTGGTCGCTCCCGAG
CAACTGCAGGCCGCTGCCCTCGACCTGGCCAAGCGCGCCGTCGCCGGCGAGCTGGACCACAAGGCACGGCGC
CAGCCGAAGCTGGAAAAGCTGAAGCTGAATGCAATCGAGCAGATGATGGCCTTCGAAACCGCCAAGGGCTTC
GTCGCCGGCCAGGCCGGTCCGAACTACCCGGCGCCGGTGGAAGCCATCAAGAGCATCCAGAAGGCCGCCAAC
TTCGGCCGCGACAAGGCGCTGGAAGTCGAAGCCGCCGGCTTCGTCAAGCTGGCCAAGACCTCGGTCGCGCAG
AGCCTGATCGGCCTGTTCCTGAATGACCAGGAACTGAAGAAGAAAGCCAAGAAATACGACGAAGTCGCCAAG
GACGTGAAACTGGCCGCCGTGCTCGGCGCCGGCATCATGGGCGGCGGCATCGCCTATCAGTCGGCGCTCAAG
GGCACCCCGATCCTGATGAAGGATATCCGCGAAGAGGGTATCCAGATGGGCCTGAACGAGGCCGCCAAGCTG
CTCGGCAAGCGCGTCGAGAAGGGTCGCCTGACCCCGGCGAAGATGGCCGAGGCGCTCAATGGCATCCGTCCG
ACCATGTCCTATGGCGACTTCGGCAACGTCGACATCGTCGTCGAAGCCGTCGTCGAGAACCCCAAGGTCAAG
CAAGCCGTGCTCGCCGAAGTGGAAGGCGCGGTGAAGGAAGACGCGATCATCGCCTCCAACACCTCGACCATC
TCCATCAGCCTGCTGGCCCAGGCGCTGAAGCGTCCGGAAAACTTCTGCGGCATGCATTTCTTCAACCCGGTG
CACATGATGCCGCTGGTGGAAGTGATCCGTGGCGAGAAGACCGGTGAAACCGCCATCGCCACCACCGTCGCC
TACGCCAAGAAGATGGGCAAGAGCCCGATCGTGGTCAACGATTGCCCCGGCTTCCTGGTCAACCGCGTGCTG
TTCCCGTACTTCGGCGGCTTCGCCAAGCTGCTGAGCTTCGGCGTCGACTTCGTGCGCATCGACAAGGTGATG
GAGAAGTTCGGCTGGCCCATGGGCCCGGCCTACCTGTCCGACGTGGTCGGCATCGACACCGGCCACCATGGC
CGCGACGTCATGGCCGAGGGCTTCCCGGACCGCATGGCGGTCGAGGGCAAGACCGCCGTCGACGTGATGTAC
GAGGCCAACCGCCTGGGCCAGAAGAACGGCAAGGGCTTCTACGCCTACGAGACCGACAAGCGCGGCAAGCCG
AAGAAGGTCACCGATCCGCAGGCCTACGAAGTGCTCAAGCCGATCGTGGTCGAGCAGCGCGAAGTGACCGAC
GAGGACATCGTCAACTTCATGATGATCCCGCTGTGCCTGGAAACCGTGCGTTGCCTGGAGGACGGCATCGTC
GAGACCGCTGCCGAGGCCGATATGGGCCTGATCTACGGCATCGGCTTCCCGCCCTTCCGTGGTGGTGCTCTG
CGCTACATCGATTCGATCGGTGTCGCCGAGTTCGTGGCCCTGGCCGACAAGTACGCCGAGCTGGGCGCGCTG
TACCACCCGACCGCGAAGCTGCGTGAAATGGCCAAGAACGGTCAGAAATTCTTCGGTTAA
Translation:
MIYQGKAITVKPLEGGIVELNFDLKGESVNKFNRLTLSELRAAVDAIKADASVKGVIVTSGKDVFIVGADIT
EFVDNFQLPDEELMAGNLEANKIFSDFEDLDVPTVAAINGIALGGGLEMCLAADFRVMSATAKVGLPEVKLG
IYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAKRAVAGELDHKARR
QPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFVKLAKTSVAQ
SLIGLFLNDQELKKKAKKYDEVAKDVKLAAVLGAGIMGGGIAYQSALKGTPILMKDIREEGIQMGLNEAAKL
LGKRVEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTI
SISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVL
FPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMY
EANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKPIVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIV
ETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAELGALYHPTAKLREMAKNGQKFFG*
AnnotationID:295 GeneID:285
Modification Date/Time:
2005-04-11 18:06:46
GeneProduct: fatty-acid oxidation complex alpha-subunit
Cell Localization Confidence Code: 5
Functional Category: (13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies): amino acid biosynthesis and metabolims
Homology: >gb|AAK18167.1| AF290949_1 (AF290949) FadB [Pseudomonas putida]
Length = 715
Score = 1251 bits (3237), Expect = 0.0
Identities = 630/714 (88%), Positives = 675/714 (94%)
>gb|AAN67749.1| AE016406_4 (AE016782) fatty oxidation complex, alpha subunit [Pseudomonas
putida KT2440]
Length = 715
Score = 1251 bits (3236), Expect = 0.0
Identities = 628/714 (87%), Positives = 676/714 (94%)
>gb|AAN53108.1| AE015454_2 (AE015454) fatty oxidation complex, alpha subunit [Shewanella
oneidensis MR-1]
Length = 716
Score = 878 bits (2269), Expect = 0.0
Identities = 450/715 (62%), Positives = 541/715 (75%), Gaps = 2/715 (0%)
Structural Features: COG1250 , FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
CD-Length = 307 residues, 99.0% aligned
Score = 317 bits (815), Expect = 2e-87
Identities = 136/312 (43%), Positives = 186/312 (59%), Gaps = 9/312 (2%)
pfam02737 , 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
CD-Length = 185 residues, 100.0% aligned
Score = 239 bits (611), Expect = 8e-64
Identities = 98/185 (52%), Positives = 127/185 (68%)