ViewGene
Locus Name:
GeneID:
Location:

GeneID:2849
TrivialName: PA14_04660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04660
PAO1 Ortholog Locus:PA0356
Sequence Length:825
Protein Length:274
Start: 414409
Stop: 415233
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03745.1|AE004473_7 (AE004473) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/274 (98%), Positives = 274/274 (100%)
Sequence:
GTGCCGCCGCAACCCCAGATCATGGTCGACCTGCAGATGGAGCAGGTCATGCCCAATCCGGACCTGAAGAAC
ATCGCCAGGCTGATCAGCCAGGACCCGGGCCTTTCCGGCGCCCTCCTGAAACTGGTGAACTCGCCGTTCTTC
GGCCTGGCCAACCGCATCACTTCGATCCAGCGCGCGGTGAACCTGCTGGGCAGTCGTTCGGTGATCAACCTG
ATCAATGCCCAGTCGATCAAGGGCGAGATGAGCGACGACACCATCGTCACCCTCAACCGTTTCTGGGACACC
GCCCAGGACGTGGCCATGAGCTGCCTGAGCCTGGCCAAGCGGGTCGGCTACGAGTCGGTGGACGAAGCCTAC
GCCCTCGGCCTGTTCCACAACTGCGGCATTCCGCTGATGCTCAAGCGCTTCCCGCACTATATGGCGGTGCTG
GAGGAGGCCTATGCCGCCGCCAGCGACAAGCGCCGGGTGGTGGACACCGAGAACCGCGTGCTGAACACCAAC
CATGCGGTGGTCGGCTACTACACCGCGCGTTCCTGGCGCCTGCCGGAGCACGTCTGCGAGGCGATCGCCAAC
CACCACAACGCGCTGTCGATCTTCGGCGACGAGTCGGCCCGCGACACCCAGCTGAAGAACCTGCTGGCGATC
CTGAAGATGGCCGAGCACATCTGCGGCTCGCACCGGATTCTCGGCAACCAGCCGGAAGACCACGAGTGGAAC
AGCATCGGCGCGCTGGTGCTGGACTACGTCGGGCTCACCGACTACGACTTCGAGAACCTCAAGGGCTCGATT
CTCGAGCTGGGCGTCGGCCAGGGCAGCTACTGA
Translation:
MPPQPQIMVDLQMEQVMPNPDLKNIARLISQDPGLSGALLKLVNSPFFGLANRITSIQRAVNLLGSRSVINL
INAQSIKGEMSDDTIVTLNRFWDTAQDVAMSCLSLAKRVGYESVDEAYALGLFHNCGIPLMLKRFPHYMAVL
EEAYAAASDKRRVVDTENRVLNTNHAVVGYYTARSWRLPEHVCEAIANHHNALSIFGDESARDTQLKNLLAI
LKMAEHICGSHRILGNQPEDHEWNSIGALVLDYVGLTDYDFENLKGSILELGVGQGSY*
AnnotationID:2857GeneID:2849
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative signal transduction histidine kinase
Cell Localization:()
Synonyms:PA0356
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1639
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1639, Predicted signal transduction protein 
[Signal transduction mechanisms]
CD-Length = 289 residues,  92.4% aligned
Score =  275 bits (704), Expect = 4e-75
Identities = 102/276 (36%), Positives = 144/276 (52%), Gaps = 11/276 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14679




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22844




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33696




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2849_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2849
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4616
                           PA0356_tr
                           translation of PA0356
                           274
                           98.90
                           99.99
                           0
                           1411.0
     

     
     
132848
                           gb|AAG03745.1|AE004473_7
                           (AE004473) hypothetical protein PA0356 [Pseudomonas aeruginosa PAO1]
                           274
                           98.54
                           99.99
                           0
                           1408.0
     

     
     
132849
                           gb|AAN70691.1|AE016712_9
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           276
                           71.01
                           82.97
                           22
                           1039.0
     

     
     
132850
                           gb|AAO53957.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           68.61
                           81.75
                           20
                           997.0
     

     






      

          
GC ORFID: 45851How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0356Glimmer Score: 

          
Start: 6215751Stop: 6216575

          
Length: 825


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0356 translation of PA0356Homolog Bit Score 548.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6600 (ORF: BLASTX 437.0), t_PA0356 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGCCGCAACCCCAGATCATGGTCGACCTGCAGATGGAGCAGGTCATGCCCAATCCGGACCTGAAGAAC 
ATCGCCAGGCTGATCAGCCAGGACCCGGGCCTTTCCGGCGCCCTCCTGAAACTGGTGAACTCGCCGTTCTTC 
GGCCTGGCCAACCGCATCACTTCGATCCAGCGCGCGGTGAACCTGCTGGGCAGTCGTTCGGTGATCAACCTG 
ATCAATGCCCAGTCGATCAAGGGCGAGATGAGCGACGACACCATCGTCACCCTCAACCGTTTCTGGGACACC 
GCCCAGGACGTGGCCATGAGCTGCCTGAGCCTGGCCAAGCGGGTCGGCTACGAGTCGGTGGACGAAGCCTAC 
GCCCTCGGCCTGTTCCACAACTGCGGCATTCCGCTGATGCTCAAGCGCTTCCCGCACTATATGGCGGTGCTG 
GAGGAGGCCTATGCCGCCGCCAGCGACAAGCGCCGGGTGGTGGACACCGAGAACCGCGTGCTGAACACCAAC 
CATGCGGTGGTCGGCTACTACACCGCGCGTTCCTGGCGCCTGCCGGAGCACGTCTGCGAGGCGATCGCCAAC 
CACCACAACGCGCTGTCGATCTTCGGCGACGAGTCGGCCCGCGACACCCAGCTGAAGAACCTGCTGGCGATC 
CTGAAGATGGCCGAGCACATCTGCGGCTCGCACCGGATTCTCGGCAACCAGCCGGAAGACCACGAGTGGAAC 
AGCATCGGCGCGCTGGTGCTGGACTACGTCGGGCTCACCGACTACGACTTCGAGAACCTCAAGGGCTCGATT 
CTCGAGCTGGGCGTCGGCCAGGGCAGCTACTGA