ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2848

TrivialName: PA14_04490

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_04490

PAO1 Ortholog Locus: PA0343

Sequence Length: 798

Protein Length: 265

Start: 400523

Stop: 399726

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03732.1|AE004472_4 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 264/265 (99%), Positives = 264/265 (99%)

Sequence:

ATGCCCTTCGTTTCCTACGCGCAGAACCTGGAAGACGTCCGACTCTGGCGGGCCCTGAAACTCTTCCCCAGG
GGGTTCTACATCGACGTCGGCGCCAACCACCCGCGGATCGACTCGGTCACCCTGGCGTTCTACGAGCGCGGC
TGGCGCGGCATCAACATCGAACCGCTGCCCCACCTGCACCGCGAGCTGGAGCGGGAACGGCCGGAAGACCTC
AACCTGAACCTCGCCATTGGCGAGCGCGAAGGCCGCGCCACGCTCTACGAGATGGCCGCCTCGGGTCTCTCC
ACCCTGGACCCCGAGCTAGCCCGCCAGCGCCAGGCCGAGGGCTGCACGGCCACTCCGCGCGAAGTGATGGTC
AGCACCCTGGACGCGATCTGCGCGGCCCATGTCGAAGGGCCGATCCACTTCCTCAAGATCGATGTCGAAGGG
CTGGAAGGCGCGGTGCTCCGCGGCCTCGACCTGAACCGCTGGCGCCCCTGGCTGATCCTCGCGGAAACCCCA
TTCGACCACGACCCCGAGTGGAAAGCGCCGCTGCTCGCCGCGGGCTACCGTTTCGTCCACTTCGACGGCCTT
AACGGCTATTACCTGGCGGAGGAACAGGCCCGCCTGGAAGGCGCCTTCGCGCTACCGCCGAACCTGCTGGAC
GACTTCCAGCTCTGCCATGGCCACGCCATGAGCCATCCGGTCGCACCGCTGGAGCAGGCCCTGGAGCAGGCG
CTGCAACGCGCAGAAGATGCGGAGCGGGCTTTGCGGGACTGGCGCGCGCTTCCCTGGTACCGCCGCCTGTTC
GGTTGA

Translation:

MPFVSYAQNLEDVRLWRALKLFPRGFYIDVGANHPRIDSVTLAFYERGWRGINIEPLPHLHRELERERPEDL
NLNLAIGEREGRATLYEMAASGLSTLDPELARQRQAEGCTATPREVMVSTLDAICAAHVEGPIHFLKIDVEG
LEGAVLRGLDLNRWRPWLILAETPFDHDPEWKAPLLAAGYRFVHFDGLNGYYLAEEQARLEGAFALPPNLLD
DFQLCHGHAMSHPVAPLEQALEQALQRAEDAERALRDWRALPWYRRLFG*

AnnotationID:2856 GeneID:2848

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 18:06:14

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0343

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:5699

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22842

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2848

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4615 PA0343_tr translation of PA0343 265 99.62 99.62 0 1412.0

132845 gb|AAG03732.1|AE004472_4 (AE004472) hypothetical protein PA0343 [Pseudomonas aeruginosa PAO1] 265 99.62 99.62 0 1412.0

132846 gb|AAO29389.1| (AE012558) conserved hypothetical protein [Xylella fastidiosa Temecula1] 457 26.69 35.01 193 483.0

132847 gb|AAF83417.1|AE003906_6 (AE003906) hypothetical protein [Xylella fastidiosa 9a5c] 457 25.16 35.22 193 466.0

GC ORFID: `45850`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0343`	Glimmer Score:
Start: `6201865`	Stop: `6201068`
Length: `798`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0343 translation of PA0343`	Homolog Bit Score `548.0`
Other Homologs: `t_PA0343 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCCTTCGTTTCCTACGCGCAGAACCTGGAAGACGTCCGACTCTGGCGGGCCCTGAAACTCTTCCCCAGG GGGTTCTACATCGACGTCGGCGCCAACCACCCGCGGATCGACTCGGTCACCCTGGCGTTCTACGAGCGCGGC TGGCGCGGCATCAACATCGAACCGCTGCCCCACCTGCACCGCGAGCTGGAGCGGGAACGGCCGGAAGACCTC AACCTGAACCTCGCCATTGGCGAGCGCGAAGGCCGCGCCACGCTCTACGAGATGGCCGCCTCGGGTCTCTCC ACCCTGGACCCCGAGCTAGCCCGCCAGCGCCAGGCCGAGGGCTGCACGGCCACTCCGCGCGAAGTGATGGTC AGCACCCTGGACGCGATCTGCGCGGCCCATGTCGAAGGGCCGATCCACTTCCTCAAGATCGATGTCGAAGGG CTGGAAGGCGCGGTGCTCCGCGGCCTCGACCTGAACCGCTGGCGCCCCTGGCTGATCCTCGCGGAAACCCCA TTCGACCACGACCCCGAGTGGAAAGCGCCGCTGCTCGCCGCGGGCTACCGTTTCGTCCACTTCGACGGCCTT AACGGCTATTACCTGGCGGAGGAACAGGCCCGCCTGGAAGGCGCCTTCGCGCTACCGCCGAACCTGCTGGAC GACTTCCAGCTCTGCCATGGCCACGCCATGAGCCATCCGGTCGCACCGCTGGAGCAGGCCCTGGAGCAGGCG CTGCAACGCGCAGAAGATGCGGAGCGGGCTTTGCGGGACTGGCGCGCGCTTCCCTGGTACCGCCGCCTGTTC GGTTGA