ViewGene

Locus Name:
GeneID:
Location:

GeneID:2847
TrivialName: PA14_65690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65690
PAO1 Ortholog Locus:PA4969
Sequence Length:819
Protein Length:272
Start: 5850890
Stop: 5850072
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08354.1|AE004910_1 (AE004910) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/272 (98%), Positives = 271/272 (99%)
Sequence:
TTGTCACGCCATTCGAACACTCCCGCCACCGACGCCTCCGTACTGCTGGTGCAGCTTTCGGACAGCCACCTG
TTCGCCGAGGACGGCGCGCGCCTGCTCGGCATGGACACCGCCCATAGCCTGGAAAAGGTGGTCGAGCGGGTC
GCCCGGGAGCAACCGCGGATCGACCTGATCCTCGCCACCGGCGACGTCTCCCAGGACGGCAGCCTGGATTCC
TACACACGCTTCCGCAGGTTGAGCGCGCCGCTGGCCGCGCCGTTGCGCTGGTTCGCCGGTAACCACGACGAA
CGCGAGCCGATGCAGCGGGCGACCGAGGGCAGCGACCTGCTGGAGCAGGTCGTCGACGTCGGCAACTGGCGC
GTGGTGTTGCTCGACTCGAGCATTCCCGGCGCGGTGCCGGGCTATCTCGAGGACGACCAGCTCGACCTGCTG
CGGCGCGCCATCGACAGCGCTGGCGAACGCTTCCTGCTGGTTTCCTTCCATCACCACCCAGTGCCGATCGGC
AGCGACTGGATGGACCCCATCGGCCTGCGCAACCCGCAGGCGCTGTTCGACCTGCTGGCGCCCTATCCGCAG
GTGCGCTGCCTGCTGTGGGGGCACATTCACCAGGAGTTCGACCGCCAGCGCGGCCCGCTGCGCCTGCTGGCC
TCGCCGTCCACCTGCGTACAGTTCGCCCCCGGCAGCAGCGACTTCACCCTCGACCGCCTGGCGCCGGGCTAC
CGCTGGTTGCGCCTGCACGACGACGGGCGCCTGGAGACGGGGATCTCGCGGGTCGACGACGTCGTCTTCGAA
GTGGACTACGACACCGCCGGATACTGA
Translation:
MSRHSNTPATDASVLLVQLSDSHLFAEDGARLLGMDTAHSLEKVVERVAREQPRIDLILATGDVSQDGSLDS
YTRFRRLSAPLAAPLRWFAGNHDEREPMQRATEGSDLLEQVVDVGNWRVVLLDSSIPGAVPGYLEDDQLDLL
RRAIDSAGERFLLVSFHHHPVPIGSDWMDPIGLRNPQALFDLLAPYPQVRCLLWGHIHQEFDRQRGPLRLLA
SPSTCVQFAPGSSDFTLDRLAPGYRWLRLHDDGRLETGISRVDDVVFEVDYDTAGY*
AnnotationID:2855GeneID:2847
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative phosphohydrolases
Cell Localization:()
Synonyms:icc
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative regulator of lacZ
Functional Category Confidence Code:5
COGs:COG1409
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70484.1|AE016689_12 (AE016792) icc protein [Pseudomonas putida KT2440]
          Length = 266

 Score =  297 bits (761), Expect = 4e-80
 Identities = 144/265 (54%), Positives = 184/265 (69%), Gaps = 2/265 (0%)

Structural Features:
COG1409, Icc, Predicted phosphohydrolases
CD-Length = 301 residues,  89.0% aligned
Score =  133 bits (335), Expect = 2e-32
Identities = 97/276 (35%), Positives = 134/276 (48%), Gaps = 27/276 (9%)
Genomic Context:
Comment:
ReferenceID:14677
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22840
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35118
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2847_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2847

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4614 PA4969_tr translation of PA4969 272 98.89 99.63 0 1413.0
132823 gb|AAG08354.1|AE004910_1 (AE004910) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 272 98.52 99.63 0 1411.0
132824 gb|AAO58393.1| (AE016874) Ser/Thr protein phosphatase [Pseudomonas syringae pv. tomato str. DC3000] 272 59.19 72.05 16 877.0
132825 gb|AAP70394.1| (AY236225) Uvs099 [uncultured bacterium] 272 52.94 66.54 34 796.0
132826 gb|AAN70484.1|AE016689_12 (AE016792) icc protein [Pseudomonas putida KT2440] 272 52.94 68.01 6 762.0
GC ORFID: 45849How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4969Glimmer Score:
Start: 5114572Stop: 5113754
Length: 819
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4969 translation of PA4969Homolog Bit Score 548.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3408 (ORF: BLASTX 348.0), t_PA4969 (ORF: GLIMMER)
GC ORF Sequence
TTGTCACGCCATTCGAACACTCCCGCCACCGACGCCTCCGTACTGCTGGTGCAGCTTTCGGACAGCCACCTG
TTCGCCGAGGACGGCGCGCGCCTGCTCGGCATGGACACCGCCCATAGCCTGGAAAAGGTGGTCGAGCGGGTC
GCCCGGGAGCAACCGCGGATCGACCTGATCCTCGCCACCGGCGACGTCTCCCAGGACGGCAGCCTGGATTCC
TACACACGCTTCCGCAGGTTGAGCGCGCCGCTGGCCGCGCCGTTGCGCTGGTTCGCCGGTAACCACGACGAA
CGCGAGCCGATGCAGCGGGCGACCGAGGGCAGCGACCTGCTGGAGCAGGTCGTCGACGTCGGCAACTGGCGC
GTGGTGTTGCTCGACTCGAGCATTCCCGGCGCGGTGCCGGGCTATCTCGAGGACGACCAGCTCGACCTGCTG
CGGCGCGCCATCGACAGCGCTGGCGAACGCTTCCTGCTGGTTTCCTTCCATCACCACCCAGTGCCGATCGGC
AGCGACTGGATGGACCCCATCGGCCTGCGCAACCCGCAGGCGCTGTTCGACCTGCTGGCGCCCTATCCGCAG
GTGCGCTGCCTGCTGTGGGGGCACATTCACCAGGAGTTCGACCGCCAGCGCGGCCCGCTGCGCCTGCTGGCC
TCGCCGTCCACCTGCGTACAGTTCGCCCCCGGCAGCAGCGACTTCACCCTCGACCGCCTGGCGCCGGGCTAC
CGCTGGTTGCGCCTGCACGACGACGGGCGCCTGGAGACGGGGATCTCGCGGGTCGACGACGTCGTCTTCGAA
GTGGACTACGACACCGCCGGATACTGA