ViewGene
Locus Name:
GeneID:
Location:

GeneID:2846
TrivialName: PA14_34390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34390
PAO1 Ortholog Locus:PA2340
Sequence Length:834
Protein Length:277
Start: 3060164
Stop: 3059331
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05728.1|AE004660_4 (AE004660) probable binding-protein-dependent maltose/mannitol transport protein [Pseudomonas aeruginosa PAO1]
Identities = 276/277 (99%), Positives = 276/277 (99%)
Sequence:
ATGCTGACACTCAAGCAATCCCGCCGCCTGCGCAACGGCCTGCTCGGCCTGCTCTGCTGGGGCATCGCCCTG
CTGCTGTTCTTCCCGATCTTCTGGATGCTGCTGACCAGCTTCAAGAGCGAGATCGACGCCTTCGCCACGCCG
CCGCAGTTCATCTTCCAGCCGACCCTGGAGAACTACCTGCACATCAACGAGCGCAGCGACTACTTCGCCTAT
GCCTGGAACTCGCTGCTGATCTCCTCCTCGGCGACCCTCCTGTGCATGCTCGTCGCGGTGCCGGCGGCCTAC
TCCATGGCCTTCTTCGAGACCCGCCACACCAAGCGCACGCTGCTCTGGATGCTGTCGACCAAGATGCTTCCG
CCGGTCGGCGTACTGATGCCGATCTACCTGCTGGCCAAGCAGTTCGGCCTGCTCGATTCGCGGCTGGCGCTG
ATCATCGTCTACACCCTGATCAACCTGCCGATCGTGGTCTGGATGGTGTACACCTACTTCAAGGACATCCCC
GTGGACATCCTCGAAGCGGCGCGCCTGGACGGCGCCGGCACCTGGCAGGAGATCGTCCGCGTGCTGCTGCCG
ATCGCCCGCGGCGGGCTCGCCTCGACCCTCCTGCTGTCGCTGATCCTGTGCTGGAACGAGGCCTTCTGGTCG
CTCAACCTGACCTCCTCGGCCGCCGCCCCGCTGACCGCCCTGGTCGCCTCCTATTCCAGCCCCGAAGGACTG
TTCTGGGCCAAGCTCTCGGCCGTCTCCACCCTCGCCTGCGCGCCGATCCTGGTCTTCGGCTGGATCAGCCAG
AAGCAGCTGGTACGCGGCCTTTCCTTCGGCGCCGTGAAATGA
Translation:
MLTLKQSRRLRNGLLGLLCWGIALLLFFPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAY
AWNSLLISSSATLLCMLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQFGLLDSRLAL
IIVYTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIARGGLASTLLLSLILCWNEAFWS
LNLTSSAAAPLTALVASYSSPEGLFWAKLSAVSTLACAPILVFGWISQKQLVRGLSFGAVK*
AnnotationID:2854GeneID:2846
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 15:03:51
Gene Name:
Confidence Code:3
GeneProduct:putative binding-protein-dependent maltose/mannitol transport protein
Cell Localization:()
Synonyms:PA2340, mtlG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:mannitol ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG0395,COG3833,COG1177
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC04470.1| (AF007800) MtlG [Pseudomonas fluorescens]
          Length = 276

 Score =  488 bits (1255), Expect = e-137
 Identities = 238/276 (86%), Positives = 262/276 (94%)

>gb|AAO56206.1| (AE016865) mannitol ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 277

 Score =  474 bits (1221), Expect = e-133

>gb|AAC16204.1| (AF010496) transmembrane maltose transport protein [Rhodobacter
           capsulatus]
          Length = 276

 Score =  333 bits (855), Expect = 5e-91
 Identities = 165/268 (61%), Positives = 209/268 (77%), Gaps = 1/268 (0%)






 
Structural Features:
COG0395, UgpE, ABC-type sugar transport system, permease component 
[Carbohydrate transport and metabolism]
CD-Length = 281 residues,  98.9% aligned
Score =  198 bits (504), Expect = 8e-52
Identities = 103/278 (37%), Positives = 163/278 (58%), Gaps = 5/278 (1%)

COG3833, MalG, ABC-type maltose transport systems, permease component 
[Carbohydrate transport and metabolism]
CD-Length = 282 residues,  99.3% aligned
Score =  135 bits (342), Expect = 5e-33
Identities = 87/281 (30%), Positives = 145/281 (51%), Gaps = 5/281 (1%)

COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II 
[Amino acid transport and metabolism]
CD-Length = 267 residues,  93.6% aligned
Score = 94.5 bits (235), Expect = 1e-20
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 6/256 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22838




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32460




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2846_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2846
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4613
                           PA2340_tr
                           translation of PA2340
                           277
                           99.63
                           99.63
                           0
                           1412.0
     

     
     
132805
                           gb|AAG05728.1|AE004660_4
                           (AE004660) probable binding-protein-dependent maltose/mannitol transport protein [Pseudomonas aeruginosa PAO1]
                           277
                           99.63
                           99.63
                           0
                           1412.0
     

     
     
132806
                           gb|AAC04470.1|
                           (AF007800) MtlG [Pseudomonas fluorescens]
                           277
                           85.92
                           94.58
                           1
                           1255.0
     

     
     
132807
                           gb|AAO56206.1|
                           (AE016865) mannitol ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           85.19
                           92.05
                           0
                           1221.0
     

     
     
132808
                           emb|CAD15849.1|
                           (AL646068) PROBABLE TRANSMEMBRANE ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           288
                           61.45
                           76.04
                           13
                           914.0
     

     






      

          
GC ORFID: 45848How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2340Glimmer Score: 

          
Start: 1893752Stop: 1894585

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2340 translation of PA2340Homolog Bit Score 548.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3067 (ORF: BLASTX 475.0), t_PA2340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACACTCAAGCAATCCCGCCGCCTGCGCAACGGCCTGCTCGGCCTGCTCTGCTGGGGCATCGCCCTG 
CTGCTGTTCTTCCCGATCTTCTGGATGCTGCTGACCAGCTTCAAGAGCGAGATCGACGCCTTCGCCACGCCG 
CCGCAGTTCATCTTCCAGCCGACCCTGGAGAACTACCTGCACATCAACGAGCGCAGCGACTACTTCGCCTAT 
GCCTGGAACTCGCTGCTGATCTCCTCCTCGGCGACCCTCCTGTGCATGCTCGTCGCGGTGCCGGCGGCCTAC 
TCCATGGCCTTCTTCGAGACCCGCCACACCAAGCGCACGCTGCTCTGGATGCTGTCGACCAAGATGCTTCCG 
CCGGTCGGCGTACTGATGCCGATCTACCTGCTGGCCAAGCAGTTCGGCCTGCTCGATTCGCGGCTGGCGCTG 
ATCATCGTCTACACCCTGATCAACCTGCCGATCGTGGTCTGGATGGTGTACACCTACTTCAAGGACATCCCC 
GTGGACATCCTCGAAGCGGCGCGCCTGGACGGCGCCGGCACCTGGCAGGAGATCGTCCGCGTGCTGCTGCCG 
ATCGCCCGCGGCGGGCTCGCCTCGACCCTCCTGCTGTCGCTGATCCTGTGCTGGAACGAGGCCTTCTGGTCG 
CTCAACCTGACCTCCTCGGCCGCCGCCCCGCTGACCGCCCTGGTCGCCTCCTATTCCAGCCCCGAAGGACTG 
TTCTGGGCCAAGCTCTCGGCCGTCTCCACCCTCGCCTGCGCGCCGATCCTGGTCTTCGGCTGGATCAGCCAG 
AAGCAGCTGGTACGCGGCCTTTCCTTCGGCGCCGTGAAATGA