ViewGene
Locus Name:
GeneID:
Location:

GeneID:2843
TrivialName: PA14_12300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12300
PAO1 Ortholog Locus:PA3983
Sequence Length:840
Protein Length:279
Start: 1062077
Stop: 1061238
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07370.1|AE004816_6 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 279/279 (100%), Positives = 279/279 (100%)
Sequence:
ATGAGCGAAGACCGATCGAGCAACGGGCACAAGTCCTGGCTGGACAAGATCACCCAGGCTTTTGCCCACGAG
CCGAGAAACCGCCAGGAGCTACTCGAGCTGCTGCGCGATGCCCACGACAACAAGCTGCTGGACAGCGAGGCG
CTGTCCATCGTCGAGGGGGCGATCCAGGTCGCCGACCTGCAGGTGCGCGACATCATGGTGCCGCGCTCGCAG
ATGATGAGCATCCGCTCGACCCAGACGCCGAAGGAATTCCTTCCGGCCATCATCGAAGCCGCCCACTCGCGC
TACCCGGTGGTCGGCGAAAGCCTCGACGACGTCATGGGCGTACTGCTGGCCAAGGACCTCCTGCCACTGATC
CTGCACAACGACGAGCGTCCCTTCGACATCAAGGAACTGCTGCGTCCGGCCACCTTCGTCCCCGAATCCAAG
CGCCTCAACGTGCTGCTCCGCGAATTCCGCGCCAACCGCAACCACATGGCCATCGTCATCGACGAATACGGC
GGCGTGGCCGGCCTGGTGACCATCGAGGACGTGCTGGAACAGATCGTCGGTGATATCGAGGACGAGCACGAC
GTCGAGGAGGACAGCTACATCAAGCCGCTGCCCAGCGGCGATTTCATCGTCAAGGCGCTGACCCCCGTGGAC
GCCTTCAACGACTTCTTCGGCTCGGAATTCTCCGACGAGGAATTCGATACCGTGGGCGGCCTGGTGATGAGC
GCCTTCGGCCACCTGCCCAAGCGCAACGAAGTGGTCGAGCTGGGCGAGTTCCGTTTCCGCGTACTCAACGCC
GACAGCCGCCGCGTCCATCTGCTGCGCCTGTCTCCCCTGCAGAACTGA
Translation:
MSEDRSSNGHKSWLDKITQAFAHEPRNRQELLELLRDAHDNKLLDSEALSIVEGAIQVADLQVRDIMVPRSQ
MMSIRSTQTPKEFLPAIIEAAHSRYPVVGESLDDVMGVLLAKDLLPLILHNDERPFDIKELLRPATFVPESK
RLNVLLREFRANRNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEHDVEEDSYIKPLPSGDFIVKALTPVD
AFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELGEFRFRVLNADSRRVHLLRLSPLQN*
AnnotationID:2851GeneID:2843
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 18:06:24
Gene Name:
Confidence Code:3
GeneProduct:Putative Mg2+ and Co2+ transporter CorC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4535,COG1253,COG4536
Secondary Functional Category(ies):Transport
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAD09823.1| (AF116773) magnesium efflux protein CorC [Salmonella typhimurium]
Length: 288
PctIdentity: 48.61
PctSimilarity68.05
Gaps: 24
Score: 694.0






 
Structural Features:
gnl|CDD|13707 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC
[Inorganic ion transport and metabolism]
Length = 293
Score =  405 bits (1043), Expect = e-114
Identities = 159/280 (56%), Positives = 214/280 (76%), Gaps = 2/280 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22832




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34081




  
Author/Investigator(s):
        Gibson MM, Bagga DA, Miller CG, Maguire ME.





  
Title:
        Magnesium transport in Salmonella typhimurium: the influence of new mutations conferring Co2+ resistance on the CorA Mg2+ transport system.




  
PubMed:
        1779764


MedLine:
        




    
Source:
Mol Microbiol. 1991 Nov;5(11):2753-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1779764&itool=iconabstr









           
Homologs By Global Alignment 

           

       



     
Gene ID:2843
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4610
                           PA3983_tr
                           translation of PA3983
                           279
                           99.99
                           99.99
                           0
                           1414.0
     

     
     
132730
                           gb|AAG07370.1|AE004816_6
                           (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           279
                           99.99
                           99.99
                           0
                           1414.0
     

     
     
132731
                           gb|AAN70358.1|AE016677_9
                           (AE016792) metal ion transporter, putative [Pseudomonas putida KT2440]
                           279
                           83.15
                           93.18
                           0
                           1216.0
     

     
     
132732
                           gb|AAO58236.1|
                           (AE016873) metal ion transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           280
                           82.85
                           92.85
                           1
                           1215.0
     

     
     
132737
                           gb|AAM37317.1|
                           (AE011883) polar amino acid transporter [Xanthomonas axonopodis pv. citri str. 306]
                           293
                           51.53
                           70.30
                           15
                           750.0
     

     






      

          
GC ORFID: 45845How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3983Glimmer Score: 

          
Start: 3891861Stop: 3892700

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3983 translation of PA3983Homolog Bit Score 549.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5729 (ORF: BLASTX 472.0), t_PA3983 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAGACCGATCGAGCAACGGGCACAAGTCCTGGCTGGACAAGATCACCCAGGCTTTTGCCCACGAG 
CCGAGAAACCGCCAGGAGCTACTCGAGCTGCTGCGCGATGCCCACGACAACAAGCTGCTGGACAGCGAGGCG 
CTGTCCATCGTCGAGGGGGCGATCCAGGTCGCCGACCTGCAGGTGCGCGACATCATGGTGCCGCGCTCGCAG 
ATGATGAGCATCCGCTCGACCCAGACGCCGAAGGAATTCCTTCCGGCCATCATCGAAGCCGCCCACTCGCGC 
TACCCGGTGGTCGGCGAAAGCCTCGACGACGTCATGGGCGTACTGCTGGCCAAGGACCTCCTGCCACTGATC 
CTGCACAACGACGAGCGTCCCTTCGACATCAAGGAACTGCTGCGTCCGGCCACCTTCGTCCCCGAATCCAAG 
CGCCTCAACGTGCTGCTCCGCGAATTCCGCGCCAACCGCAACCACATGGCCATCGTCATCGACGAATACGGC 
GGCGTGGCCGGCCTGGTGACCATCGAGGACGTGCTGGAACAGATCGTCGGTGATATCGAGGACGAGCACGAC 
GTCGAGGAGGACAGCTACATCAAGCCGCTGCCCAGCGGCGATTTCATCGTCAAGGCGCTGACCCCCGTGGAC 
GCCTTCAACGACTTCTTCGGCTCGGAATTCTCCGACGAGGAATTCGATACCGTGGGCGGCCTGGTGATGAGC 
GCCTTCGGCCACCTGCCCAAGCGCAACGAAGTGGTCGAGCTGGGCGAGTTCCGTTTCCGCGTACTCAACGCC 
GACAGCCGCCGCGTCCATCTGCTGCGCCTGTCTCCCCTGCAGAACTGA