ViewGene
Locus Name:
GeneID:
Location:

GeneID:2842
TrivialName: PA14_21290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21290
PAO1 Ortholog Locus:PA3304
Sequence Length:858
Protein Length:285
Start: 1844273
Stop: 1845130
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06692.1|AE004752_8 (AE004752) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 285/285 (100%), Positives = 285/285 (100%)
Sequence:
ATGCGTGCATCGCTTCGCGTCGTCGTCACCCTGCTGGTGGTCGCTGCCGCCGTCCTCGCCGGCATCTGGCTC
TGGCGCTACTACATGCTCTCGCCCTGGACCCGCGATGCCCGGGTGCGGGCCGACGTGGTGGTGGTGGCGCCG
GACGTGTCCGGCTGGGTGACCGACCTGGAAGTCAAGGACAACCAGGTGGTCAAGGTCGGCGACGTGCTGATG
CGCATCGACCAGGAACGCTACCAGGCCAACCTGGAGCAGGCCCGCGCCGTCGCCGAGACCCGTCACCAGCAA
TACCTGTTGCGCCAGAACGAGGCGGCCCGGCGCAGCCGCCTGGGCATCGGCGCGATCAGCGCCGAGGACAAG
GAAAACGCCCAGATCAATGCCGCCATCGCTCGCAGCGAGTACCAGGAAGCACTGGCCCAGGTGAAGATCGCC
GAACTCAACCTCAAGCGCAGCGAACTGCGCGCTGCGCGCAACGGACAGGTGACCAACCTGCGCCTGGCCCAG
GGCAACTACGCCACGGCGGGCCAGGCGGTGATGGCGCTGGTCGACCAGCAGTCCTTCTATGTGGTCGCCTAC
TTCGAGGAAACCAAGCTGCCCGGCATCCGCGTCGGCATGCGCGCCCAGGTCCGCCTGATGAGCGGCGATCAG
CCGATCGACGGCACGGTGGAGAGCATCAGCAGCGGTATCACCGACCGCAACTCGACGCCGGACGGCCAGTTG
CTGGCCAATGTCGAGCCGACCTTCAACTGGGTGCGCCTGGCGCAGCGCATTCCGGTGCGCATCCGCCTCGAC
CAGGTGCCGGCGGATGTCCACCTGAGCGCCGGGATGACCGCCAGCGTCACCGTGCAGGGGGACTGA
Translation:
MRASLRVVVTLLVVAAAVLAGIWLWRYYMLSPWTRDARVRADVVVVAPDVSGWVTDLEVKDNQVVKVGDVLM
RIDQERYQANLEQARAVAETRHQQYLLRQNEAARRSRLGIGAISAEDKENAQINAAIARSEYQEALAQVKIA
ELNLKRSELRAARNGQVTNLRLAQGNYATAGQAVMALVDQQSFYVVAYFEETKLPGIRVGMRAQVRLMSGDQ
PIDGTVESISSGITDRNSTPDGQLLANVEPTFNWVRLAQRIPVRIRLDQVPADVHLSAGMTASVTVQGD*
AnnotationID:2850GeneID:2842
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative membrane fusion protein
Cell Localization:()
Synonyms:PA3304
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative fusaric acid resistance protein
Functional Category Confidence Code:5
COGs:COG1566
Secondary Functional Category(ies):protein secretion/export apparatus; adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66777.1|AE016306_3 (AE016778) membrane fusion protein, putative [Pseudomonas putida
           KT2440]
          Length = 289

 Score =  380 bits (977), Expect = e-105
 Identities = 198/285 (69%), Positives = 230/285 (80%)

>gb|AAN66890.1|AE016317_7 (AE016778) fusaric acid resistance protein, putative [Pseudomonas
           putida KT2440]
          Length = 286

 Score =  271 bits (694), Expect = 2e-72
 Identities = 139/283 (49%), Positives = 205/283 (72%), Gaps = 1/283 (0%)

>emb|CAE33575.1| (BX640446) putative HlyD family secretion protein [Bordetella
           bronchiseptica]
          Length = 297

 Score =  242 bits (617), Expect = 2e-63
 Identities = 139/277 (50%), Positives = 172/277 (62%), Gaps = 1/277 (0%)









 
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues,  93.8% aligned
Score =  225 bits (575), Expect = 4e-60
Identities = 127/333 (38%), Positives = 166/333 (49%), Gaps = 51/333 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22830




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32248




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2842_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2842
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4606
                           PA3304_tr
                           translation of PA3304
                           285
                           99.99
                           99.99
                           0
                           1414.0
     

     
     
132684
                           gb|AAG06692.1|AE004752_8
                           (AE004752) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           99.99
                           99.99
                           0
                           1414.0
     

     
     
132685
                           gb|AAN66777.1|AE016306_3
                           (AE016778) membrane fusion protein, putative [Pseudomonas putida KT2440]
                           289
                           68.51
                           79.58
                           4
                           977.0
     

     
     
132687
                           gb|AAO54747.1|
                           (AE016860) fusaric acid resistance protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           287
                           50.52
                           69.33
                           3
                           667.0
     

     
     
132686
                           gb|AAN66890.1|AE016317_7
                           (AE016778) fusaric acid resistance protein, putative [Pseudomonas putida KT2440]
                           287
                           48.78
                           72.12
                           3
                           694.0
     

     






      

          
GC ORFID: 45844How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3304Glimmer Score: 

          
Start: 3109658Stop: 3108801

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3304 translation of PA3304Homolog Bit Score 549.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4368 (ORF: BLASTX 261.0), t_PA3892 (ORF: BLASTX 255.0), t_PA2430 (ORF: BLASTX 222.0), psyr_15may02_Scaffold9_revised_gene8201 (ORF: BLASTX 220.0), t_PA1231 (ORF: BLASTX 217.0), t_PA3304 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGCATCGCTTCGCGTCGTCGTCACCCTGCTGGTGGTCGCTGCCGCCGTCCTCGCCGGCATCTGGCTC 
TGGCGCTACTACATGCTCTCGCCCTGGACCCGCGATGCCCGGGTGCGGGCCGACGTGGTGGTGGTGGCGCCG 
GACGTGTCCGGCTGGGTGACCGACCTGGAAGTCAAGGACAACCAGGTGGTCAAGGTCGGCGACGTGCTGATG 
CGCATCGACCAGGAACGCTACCAGGCCAACCTGGAGCAGGCCCGCGCCGTCGCCGAGACCCGTCACCAGCAA 
TACCTGTTGCGCCAGAACGAGGCGGCCCGGCGCAGCCGCCTGGGCATCGGCGCGATCAGCGCCGAGGACAAG 
GAAAACGCCCAGATCAATGCCGCCATCGCTCGCAGCGAGTACCAGGAAGCACTGGCCCAGGTGAAGATCGCC 
GAACTCAACCTCAAGCGCAGCGAACTGCGCGCTGCGCGCAACGGACAGGTGACCAACCTGCGCCTGGCCCAG 
GGCAACTACGCCACGGCGGGCCAGGCGGTGATGGCGCTGGTCGACCAGCAGTCCTTCTATGTGGTCGCCTAC 
TTCGAGGAAACCAAGCTGCCCGGCATCCGCGTCGGCATGCGCGCCCAGGTCCGCCTGATGAGCGGCGATCAG 
CCGATCGACGGCACGGTGGAGAGCATCAGCAGCGGTATCACCGACCGCAACTCGACGCCGGACGGCCAGTTG 
CTGGCCAATGTCGAGCCGACCTTCAACTGGGTGCGCCTGGCGCAGCGCATTCCGGTGCGCATCCGCCTCGAC 
CAGGTGCCGGCGGATGTCCACCTGAGCGCCGGGATGACCGCCAGCGTCACCGTGCAGGGGGACTGA