ViewGene
Locus Name:
GeneID:
Location:

GeneID:2841
TrivialName: PA14_32450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32450
PAO1 Ortholog Locus:PA2489
Sequence Length:816
Protein Length:271
Start: 2822322
Stop: 2821507
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05877.1|AE004676_9 (AE004676) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 269/271 (99%), Positives = 269/271 (99%)
Sequence:
ATGAGCCACGCCAATACGCCCCGCGACTGGGTTCGACGCGCCCCGCAACACGGTGCGGTGGAACGCATCGAG
GCTTACTTCGCCGGCCACGGCTACGATCCGCATCGCCACGACACCTATGCCATCGGCCAGACCCTGGCCGGG
GTGCAGAGCTTCCGCTATCGCCGCAGCCAGCGCCACAGCCTGCCGGGCGGCTGCCTGGTGCTGCATCCCGAC
GAGCTGCACGACGGCGAGGCCGGCAGCCAGGAAGGGTTCCGCTACCGGATGCTCTACGTCGAGCCGGCGCTG
ATCCAACAGGCCCTCGGCGGCCGGCCGCTGCCGTTCGTGCGCGGGGGCTTGTCCGACGACCCGCGCCTGATC
GCCGCCAGCCGGACCCTGCTACAGGCCATGGATACCCCGCTGGAGCCGCTGGAAGAACAGGACGCCCTGTTC
GAACTGGCCCACGCCCTCGACGCTGTAGCCGGCAACCGGGCGCGCGGCAGGCGCCACTTCGACTTCGTCGCC
GCCGAGCGCGCCCGGCAGTACATCCACGCGCACCTGGAGCGCCCGCTGAGCCTCGACGAACTGGCGCAGGTC
GCCCAGCGCGAACGCTGGAGCCTGTCGCGCGATTTCCGCGCGCTGTTCGGCACCAGCCCCTACCGCTACCTG
ATCCAGCGCCGGCTGGACATCGCCCGCCGGCTGATGCTCGGCGGCCAGACGCTGGCCGAAGCCGCGCTTGCC
GCCGGTTTCGCCGACCAGAGCCACATGACCCGCCATTTCGGCCAGAGCTACGGCCTGCCGCCGGCACGCTGG
CTGCGTATGCTCGGCCGCGCCTAG
Translation:
MSHANTPRDWVRRAPQHGAVERIEAYFAGHGYDPHRHDTYAIGQTLAGVQSFRYRRSQRHSLPGGCLVLHPD
ELHDGEAGSQEGFRYRMLYVEPALIQQALGGRPLPFVRGGLSDDPRLIAASRTLLQAMDTPLEPLEEQDALF
ELAHALDAVAGNRARGRRHFDFVAAERARQYIHAHLERPLSLDELAQVAQRERWSLSRDFRALFGTSPYRYL
IQRRLDIARRLMLGGQTLAEAALAAGFADQSHMTRHFGQSYGLPPARWLRMLGRA*
AnnotationID:2849GeneID:2841
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2489
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67686.1|AE016399_3 (AE016781) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 274

 Score =  352 bits (903), Expect = 1e-96
 Identities = 172/262 (65%), Positives = 202/262 (77%), Gaps = 1/262 (0%)








 
Structural Features:
pfam02311, AraC_binding, AraC-like ligand binding domain.
CD-Length = 140 residues,  97.9% aligned
Score = 87.4 bits (216), Expect = 2e-18
Identities = 51/137 (37%), Positives = 68/137 (49%), Gaps = 3/137 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22828




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33031




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2841_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2841
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4605
                           PA2489_tr
                           translation of PA2489
                           271
                           99.26
                           99.26
                           0
                           1414.0
     

     
     
132678
                           gb|AAG05877.1|AE004676_9
                           (AE004676) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           271
                           99.26
                           99.26
                           0
                           1414.0
     

     
     
132679
                           gb|AAN67686.1|AE016399_3
                           (AE016781) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           276
                           63.04
                           74.27
                           7
                           898.0
     

     
     
132680
                           dbj|BAB51655.1|
                           (AP003005) transcriptional regulator [Mesorhizobium loti]
                           290
                           42.41
                           56.55
                           19
                           577.0
     

     
     
132682
                           gb|AAK86055.1|
                           (AE007963) AGR_C_407p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           271
                           40.22
                           54.98
                           13
                           523.0
     

     






      

          
GC ORFID: 45843How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2489Glimmer Score: 

          
Start: 2131602Stop: 2132417

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2489 translation of PA2489Homolog Bit Score 549.0

          
Other Homologs:  t_PA2489 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACGCCAATACGCCCCGCGACTGGGTTCGACGCGCCCCGCAACACGGTGCGGTGGAACGCATCGAG 
GCTTACTTCGCCGGCCACGGCTACGATCCGCATCGCCACGACACCTATGCCATCGGCCAGACCCTGGCCGGG 
GTGCAGAGCTTCCGCTATCGCCGCAGCCAGCGCCACAGCCTGCCGGGCGGCTGCCTGGTGCTGCATCCCGAC 
GAGCTGCACGACGGCGAGGCCGGCAGCCAGGAAGGGTTCCGCTACCGGATGCTCTACGTCGAGCCGGCGCTG 
ATCCAACAGGCCCTCGGCGGCCGGCCGCTGCCGTTCGTGCGCGGGGGCTTGTCCGACGACCCGCGCCTGATC 
GCCGCCAGCCGGACCCTGCTACAGGCCATGGATACCCCGCTGGAGCCGCTGGAAGAACAGGACGCCCTGTTC 
GAACTGGCCCACGCCCTCGACGCTGTAGCCGGCAACCGGGCGCGCGGCAGGCGCCACTTCGACTTCGTCGCC 
GCCGAGCGCGCCCGGCAGTACATCCACGCGCACCTGGAGCGCCCGCTGAGCCTCGACGAACTGGCGCAGGTC 
GCCCAGCGCGAACGCTGGAGCCTGTCGCGCGATTTCCGCGCGCTGTTCGGCACCAGCCCCTACCGCTACCTG 
ATCCAGCGCCGGCTGGACATCGCCCGCCGGCTGATGCTCGGCGGCCAGACGCTGGCCGAAGCCGCGCTTGCC 
GCCGGTTTCGCCGACCAGAGCCACATGACCCGCCATTTCGGCCAGAGCTACGGCCTGCCGCCGGCACGCTGG 
CTGCGTATGCTCGGCCGCGCCTAG