ViewGene
Locus Name:
GeneID:
Location:

GeneID:2840
TrivialName: PA14_07010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07010
PAO1 Ortholog Locus:PA0539
Sequence Length:831
Protein Length:276
Start: 607682
Stop: 608512
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03928.1|AE004490_8 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 275/276 (99%), Positives = 275/276 (99%)
Sequence:
ATGCTAGCCACCAGCCTGGTGCTGTGCGCCGCCGTTCTCCACGCCACCTGGAACACCCTGGTCAAGTTCAGC
AGCGACCGCTTGCTGGTCGTCGCTTGCATGGACGTGGTCGGCGTGCTCTGCGCCATCCTGCTGTTGCCCTTC
GTCAGCCTGCCGCCGGCCGAAGTCTGGCCCTGGCTGCTCGGCGCCACCGTCCTGCAACTGCTCTACCGGGTA
CTGCTGATCGAGGCCTACAAGGTCGGCGACCTGGGCCTGGTCTATCCGCTGATGCGCGGGCTGTCGCCGCTG
GTGGTGCTGGGCCTGACCCTGGCGTTCGGCGGCGAGCAGCTCAGCGGCCGGCAGATCCTCGGCATCCTGTTG
ATCCCCTTCGGCATGCTTTGCCTGCTCTGGGGCGGCGGCGGTTCGCGCCTGCCCTGGCGGACTCTGCCGGTG
GTGCTGCTGATCGGCCTGTGCATCGGCGGATACACCTGGAGCGACGGCAACGCCCTGAAGCGCTGGCCGTTG
GCGCTGGACTACCTGGTCTGGCTGACGCTGCTCTCCGGCCTGCCGTTCCCGCTGATCGCCGCCGGCGCGCGA
ACCCGCGCCTTCGCCCGCTTCTGGGCGCTGGAGTGGAAGCTCGGCCTGGCGGTCGGGGTCTGCGTGCTGGCC
AGCTACGGCCTGGTGCTGTGGGCCATGCAGCTGGGGTCGATCGCCGAAGCGGCGGCGTTGCGCGAGACCAGC
GTGCTGTTGGCGGTGCTGTTCGGCATGCGCTTCCTCAACGAGCCGTTCGGACTGCCGCGCCTGCTGGCGTGC
GGCCTGGTGCTGGCCGGAATGCTGCTGATGAAACTCTGA
Translation:
MLATSLVLCAAVLHATWNTLVKFSSDRLLVVACMDVVGVLCAILLLPFVSLPPAEVWPWLLGATVLQLLYRV
LLIEAYKVGDLGLVYPLMRGLSPLVVLGLTLAFGGEQLSGRQILGILLIPFGMLCLLWGGGGSRLPWRTLPV
VLLIGLCIGGYTWSDGNALKRWPLALDYLVWLTLLSGLPFPLIAAGARTRAFARFWALEWKLGLAVGVCVLA
SYGLVLWAMQLGSIAEAAALRETSVLLAVLFGMRFLNEPFGLPRLLACGLVLAGMLLMKL*
AnnotationID:2848GeneID:2840
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:41
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70540.1|AE016696_5 (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 277

 Score =  399 bits (1026), Expect = e-111
 Identities = 198/277 (71%), Positives = 225/277 (81%), Gaps = 1/277 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5683




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22826




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2840
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4604
                           PA0539_tr
                           translation of PA0539
                           276
                           99.63
                           99.63
                           0
                           1417.0
     

     
     
132676
                           gb|AAG03928.1|AE004490_8
                           (AE004490) hypothetical protein PA0539 [Pseudomonas aeruginosa PAO1]
                           276
                           99.63
                           99.63
                           0
                           1417.0
     

     
     
132677
                           gb|AAN70540.1|AE016696_5
                           (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
                           277
                           71.48
                           81.22
                           1
                           1028.0
     

     






      

          
GC ORFID: 45842How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0539Glimmer Score: 

          
Start: 6409024Stop: 6409854

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0539 translation of PA0539Homolog Bit Score 550.0

          
Other Homologs:  t_PA0539 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGCCACCAGCCTGGTGCTGTGCGCCGCCGTTCTCCACGCCACCTGGAACACCCTGGTCAAGTTCAGC 
AGCGACCGCTTGCTGGTCGTCGCTTGCATGGACGTGGTCGGCGTGCTCTGCGCCATCCTGCTGTTGCCCTTC 
GTCAGCCTGCCGCCGGCCGAAGTCTGGCCCTGGCTGCTCGGCGCCACCGTCCTGCAACTGCTCTACCGGGTA 
CTGCTGATCGAGGCCTACAAGGTCGGCGACCTGGGCCTGGTCTATCCGCTGATGCGCGGGCTGTCGCCGCTG 
GTGGTGCTGGGCCTGACCCTGGCGTTCGGCGGCGAGCAGCTCAGCGGCCGGCAGATCCTCGGCATCCTGTTG 
ATCCCCTTCGGCATGCTTTGCCTGCTCTGGGGCGGCGGCGGTTCGCGCCTGCCCTGGCGGACTCTGCCGGTG 
GTGCTGCTGATCGGCCTGTGCATCGGCGGATACACCTGGAGCGACGGCAACGCCCTGAAGCGCTGGCCGTTG 
GCGCTGGACTACCTGGTCTGGCTGACGCTGCTCTCCGGCCTGCCGTTCCCGCTGATCGCCGCCGGCGCGCGA 
ACCCGCGCCTTCGCCCGCTTCTGGGCGCTGGAGTGGAAGCTCGGCCTGGCGGTCGGGGTCTGCGTGCTGGCC 
AGCTACGGCCTGGTGCTGTGGGCCATGCAGCTGGGGTCGATCGCCGAAGCGGCGGCGTTGCGCGAGACCAGC 
GTGCTGTTGGCGGTGCTGTTCGGCATGCGCTTCCTCAACGAGCCGTTCGGACTGCCGCGCCTGCTGGCGTGC 
GGCCTGGTGCTGGCCGGAATGCTGCTGATGAAACTCTGA