ViewGene

Locus Name:
GeneID:
Location:

GeneID:2838
TrivialName: PA14_01340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01340
PAO1 Ortholog Locus:PA0110
Sequence Length:795
Protein Length:264
Start: 129723
Stop: 130517
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03500.1|AE004449_9 (AE004449) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 264/264 (100%), Positives = 264/264 (100%)
Sequence:
ATGGGGGGATTCATGCAGTATAGCCAGCGCCTCGGGGAGGCCGGACGCAATGACAGACGCAGCATGCGTGGC
GCGTTCCGCCCCGGCCTGCTGCCGACCCTGGTAGTCCTCGGCCTGCTGCCGGTGCTGCTCTGGCTGGGCACC
TGGCAGTTGCAGCGGGCCGACGAGAAGCGCGCCCTGCTGGCCAGCTACGAGGCCCGGCGCGGCGCCGAGCCG
GTGTCGCCCGGGCAGCTAGAGGGGCTGCGCGACCCGGCGTACGTCCGCGTGCGCCTGCACGGCCGCTTCGAC
GAGCGGCATACGCTGCTGCTGGATAACCGGCTGCGCAACGGGCAGGCCGGGGTCGAGGTGCTGCAACCCTTC
TACGACCAGGCCAGCGGCCTCTGGCTGCTGGTCAACCGCGGCTGGGTCGCATGGACTGACCGACGTTCGCCG
CCGACGCTGGAAACCCCCGACCGCGTCCTCCTGCTCGACGCCTGGACCTACCTGCCGCCACCCGGCGGCCTG
CACCTGGCCGACGCGCCGGCCGGCGGCTGGCCGCGCCTGGTGACCCAGCTCGACATCCCGGCGCTGTGGCAG
GCCTTCGGTCGCGCCGGGCTGCCCTGGGAAATCCGCCTGGAACCGGGCGACGCCAGCTTCGACACCGACTGG
CCCCTGGTCTCGATGCCGCCGGAGCGGCACACCGGCTACGCCGTGCAGTGGTTCGCCCTGGCGACGGCCCTG
CTCGCCCTCTATCTCTACCTCGGTGTGCGCCGCGCACGGGAGAAAAACCATGAGTCTCGCGATTCCGATGCC
TGA
Translation:
MGGFMQYSQRLGEAGRNDRRSMRGAFRPGLLPTLVVLGLLPVLLWLGTWQLQRADEKRALLASYEARRGAEP
VSPGQLEGLRDPAYVRVRLHGRFDERHTLLLDNRLRNGQAGVEVLQPFYDQASGLWLLVNRGWVAWTDRRSP
PTLETPDRVLLLDAWTYLPPPGGLHLADAPAGGWPRLVTQLDIPALWQAFGRAGLPWEIRLEPGDASFDTDW
PLVSMPPERHTGYAVQWFALATALLALYLYLGVRRAREKNHESRDSDA*
AnnotationID:2846GeneID:2838
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0110
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5679
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22822
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33449
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2838_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2838

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4600 PA0110_tr translation of PA0110 264 99.99 99.99 0 1416.0
132523 gb|AAG03500.1|AE004449_9 (AE004449) hypothetical protein PA0110 [Pseudomonas aeruginosa PAO1] 264 99.99 99.99 0 1416.0
132524 gb|AAN65741.1|AE016200_5 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440] 344 40.69 50.00 91 709.0
GC ORFID: 45840How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0110Glimmer Score:
Start: 5931062Stop: 5931856
Length: 795
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0110 translation of PA0110Homolog Bit Score 550.0
Other Homologs: t_PA0110 (ORF: GLIMMER)
GC ORF Sequence
ATGGGGGGATTCATGCAGTATAGCCAGCGCCTCGGGGAGGCCGGACGCAATGACAGACGCAGCATGCGTGGC
GCGTTCCGCCCCGGCCTGCTGCCGACCCTGGTAGTCCTCGGCCTGCTGCCGGTGCTGCTCTGGCTGGGCACC
TGGCAGTTGCAGCGGGCCGACGAGAAGCGCGCCCTGCTGGCCAGCTACGAGGCCCGGCGCGGCGCCGAGCCG
GTGTCGCCCGGGCAGCTAGAGGGGCTGCGCGACCCGGCGTACGTCCGCGTGCGCCTGCACGGCCGCTTCGAC
GAGCGGCATACGCTGCTGCTGGATAACCGGCTGCGCAACGGGCAGGCCGGGGTCGAGGTGCTGCAACCCTTC
TACGACCAGGCCAGCGGCCTCTGGCTGCTGGTCAACCGCGGCTGGGTCGCATGGACTGACCGACGTTCGCCG
CCGACGCTGGAAACCCCCGACCGCGTCCTCCTGCTCGACGCCTGGACCTACCTGCCGCCACCCGGCGGCCTG
CACCTGGCCGACGCGCCGGCCGGCGGCTGGCCGCGCCTGGTGACCCAGCTCGACATCCCGGCGCTGTGGCAG
GCCTTCGGTCGCGCCGGGCTGCCCTGGGAAATCCGCCTGGAACCGGGCGACGCCAGCTTCGACACCGACTGG
CCCCTGGTCTCGATGCCGCCGGAGCGGCACACCGGCTACGCCGTGCAGTGGTTCGCCCTGGCGACGGCCCTG
CTCGCCCTCTATCTCTACCTCGGTGTGCGCCGCGCACGGGAGAAAAACCATGAGTCTCGCGATTCCGATGCC
TGA