ViewGene
Locus Name:
GeneID:
Location:

GeneID:2837
TrivialName: PA14_01040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01040
PAO1 Ortholog Locus:PA0086
Sequence Length:846
Protein Length:281
Start: 101659
Stop: 102504
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03476.1|AE004447_9 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/281 (100%), Positives = 281/281 (100%)
Sequence:
ATGGCCGACCCTTCATTCGCATCCGGGCGCCTGGGCTCCCGGCTACAGGGAAGTATCGCGATGATCGCCGAA
GAACTGTTGCGCGCCGGGCGCCTGGACGATGCCTTGAAAGCCTTGCAGGAACAGGTGCGCAGCCAGCCGTCG
AACGCCACCCTGCGGATCTTCCTGTTCCAGCTGCTGGCCGTGATGGGCCAGTGGGCGCGGGCGCAGAACCAG
CTCAAGGTGGTCGGCGAACTGGATGCCTCGGCGCTGCCGATGGTACAGACCTACTCCACCGCCATCGACTGC
GAGGCGCTGCGCCGCGAGGTGTTCGCCGGGCGCCTGACGCCGGTGATCCTCGGCCAGCCGGCGGAATGGATC
GCGCCGCTGTTGCAGGCCCTGAGCCTGGACGCCGAGGGCCATGGCGAGGCCGCCCAGGCCCTGCGCGAGCAG
GCCTTCGACGCCGCGCCGGCGGTGCCCGGGCGGATCGGCGAAGCGCCGTTCGCCTGGCTGGCAGATGCCGAC
ACGCGCCTCGGCCCGGTGCTCGAGGTAATCGTCAACGGTCGCTATGCCTGGTTGCCGATGAGCAACCTGCGC
AGCCTCAAGGTCGAGGCGCCGAGCGACCTGCGCGACCTGGTCTGGCTGCCGGCCGAACTGACCCTGGCCAAC
GGTGGCGCCACCGTCGCGCTGCTGCCGGCGCGCTACGCGGAAACCGTCGAGCACGGCGACGACGCCGCGCGC
CTGGGGCGCAAGACCGAATGGCTGGATAGCGGCCTGCCGGTCGGCCAGCGGCTGTTCGTCACCGATGCCGGC
GAGACCGCGCTGTTCGACCTGCGTGAGCTGGACTTCGAGCCGACGGACGCCTGA
Translation:
MADPSFASGRLGSRLQGSIAMIAEELLRAGRLDDALKALQEQVRSQPSNATLRIFLFQLLAVMGQWARAQNQ
LKVVGELDASALPMVQTYSTAIDCEALRREVFAGRLTPVILGQPAEWIAPLLQALSLDAEGHGEAAQALREQ
AFDAAPAVPGRIGEAPFAWLADADTRLGPVLEVIVNGRYAWLPMSNLRSLKVEAPSDLRDLVWLPAELTLAN
GGATVALLPARYAETVEHGDDAARLGRKTEWLDSGLPVGQRLFVTDAGETALFDLRELDFEPTDA*
AnnotationID:2845GeneID:2837
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:25
Gene Name:
Confidence Code:3
GeneProduct:putative secretion protein
Cell Localization:()
Synonyms:PA0086
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4455,pfam07024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4455, ImpE, Protein of avirulence locus involved in temperature-dependent 
protein secretion
CD-Length = 273 residues, 100.0% aligned
Score =  338 bits (867), Expect = 6e-94
Identities = 135/274 (49%), Positives = 161/274 (58%), Gaps = 9/274 (3%)

pfam07024, ImpE, ImpE protein
CD-Length = 255 residues, 100.0% aligned
Score =  304 bits (780), Expect = 8e-84
Identities = 130/256 (50%), Positives = 163/256 (63%), Gaps = 5/256 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5677




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22820




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33443




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2837_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2837
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4599
                           PA0086_tr
                           translation of PA0086
                           281
                           99.99
                           99.99
                           0
                           1418.0
     

     
     
132519
                           gb|AAG03476.1|AE004447_9
                           (AE004447) hypothetical protein PA0086 [Pseudomonas aeruginosa PAO1]
                           281
                           99.99
                           99.99
                           0
                           1418.0
     

     
     
132520
                           gb|AAM38979.1|
                           (AE012064) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           290
                           45.17
                           62.06
                           20
                           622.0
     

     
     
132521
                           emb|CAE31302.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           290
                           39.65
                           52.06
                           30
                           482.0
     

     
     
132522
                           emb|CAE40126.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           290
                           39.65
                           52.06
                           30
                           482.0
     

     






      

          
GC ORFID: 45839How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0086Glimmer Score: 

          
Start: 5902998Stop: 5903843

          
Length: 846


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0086 translation of PA0086Homolog Bit Score 550.0

          
Other Homologs:  t_PA0086 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGACCCTTCATTCGCATCCGGGCGCCTGGGCTCCCGGCTACAGGGAAGTATCGCGATGATCGCCGAA 
GAACTGTTGCGCGCCGGGCGCCTGGACGATGCCTTGAAAGCCTTGCAGGAACAGGTGCGCAGCCAGCCGTCG 
AACGCCACCCTGCGGATCTTCCTGTTCCAGCTGCTGGCCGTGATGGGCCAGTGGGCGCGGGCGCAGAACCAG 
CTCAAGGTGGTCGGCGAACTGGATGCCTCGGCGCTGCCGATGGTACAGACCTACTCCACCGCCATCGACTGC 
GAGGCGCTGCGCCGCGAGGTGTTCGCCGGGCGCCTGACGCCGGTGATCCTCGGCCAGCCGGCGGAATGGATC 
GCGCCGCTGTTGCAGGCCCTGAGCCTGGACGCCGAGGGCCATGGCGAGGCCGCCCAGGCCCTGCGCGAGCAG 
GCCTTCGACGCCGCGCCGGCGGTGCCCGGGCGGATCGGCGAAGCGCCGTTCGCCTGGCTGGCAGATGCCGAC 
ACGCGCCTCGGCCCGGTGCTCGAGGTAATCGTCAACGGTCGCTATGCCTGGTTGCCGATGAGCAACCTGCGC 
AGCCTCAAGGTCGAGGCGCCGAGCGACCTGCGCGACCTGGTCTGGCTGCCGGCCGAACTGACCCTGGCCAAC 
GGTGGCGCCACCGTCGCGCTGCTGCCGGCGCGCTACGCGGAAACCGTCGAGCACGGCGACGACGCCGCGCGC 
CTGGGGCGCAAGACCGAATGGCTGGATAGCGGCCTGCCGGTCGGCCAGCGGCTGTTCGTCACCGATGCCGGC 
GAGACCGCGCTGTTCGACCTGCGTGAGCTGGACTTCGAGCCGACGGACGCCTGA