ViewGene
Locus Name:
GeneID:
Location:

GeneID:2836
TrivialName: PA14_71020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71020
PAO1 Ortholog Locus:PA5377
Sequence Length:840
Protein Length:279
Start: 6328351
Stop: 6327512
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08762.1|AE004950_5 (AE004950) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 279/279 (100%), Positives = 279/279 (100%)
Sequence:
ATGTTCCTGACTGATCACAAGCTCCCGCTGGGAGAGCAGATCGCCGGTTTCGTCGACTGGCTGACCCTGCAT
GGCGCATCGTTCTTCGACAAGATCTCCGACACCCTGGAGTTCCTCATCCATGGCGTCACCAACGGCTTGCTC
TGGTTCAACCCGTTGGTGCTGATCGCCTTGCTGGTAGGGCTGGTGCATTTCATCCAGCGCAGCTGGGGGCTG
ACCGTGTTCGCCCTGGCCTCGTTGCTGCTGATCCTCAACCTGGGCTACTGGCAGGAGACCATGGAAACCCTC
GCCCAGGTGATATTCGCCACCCTGGTGTGCATCGCCGTGGGCGTGCCGCTGGGCATCGTCGCCGCGCACAAG
CCGTGGTTCTACACCGCGCTGCGGCCGTTGCTGGACCTGATGCAGACGGTACCGACCTTCGTCTACCTGATC
CCGACCCTGACCCTGTTCGGTCTCGGCGTGGTGCCGGGCCTGATCTCCACGGTGATCTTCGCCGTCGCCGCG
CCGATCCGCCTGACCTGCCTGGGTATCCAGGACGTGCCGGCGGAGCTGCTCGACGCCGGCAAGGCCTTCGGC
TGCTCGCGCTGGCAACTGCTCACGCGCATCGAGCTGCCGCACGCGATGCCGAGCATCGCCGCCGGCATCACC
CAATGCATCATGCTCTCCCTGTCGATGGTGGTGATCGCCGCGCTGGTCGGCGCCGATGGCCTCGGCAAGCCG
GTGGTGAACGCGCTGAACACCGCCGACATCTCCCTCGGCTTCGAAGCCGGCCTGGCCATCGTCCTGCTCGCC
ATCCTGCTCGACCGGGTGTGCAAGCAGCGCGCCGTGAAGGGGAAATAA
Translation:
MFLTDHKLPLGEQIAGFVDWLTLHGASFFDKISDTLEFLIHGVTNGLLWFNPLVLIALLVGLVHFIQRSWGL
TVFALASLLLILNLGYWQETMETLAQVIFATLVCIAVGVPLGIVAAHKPWFYTALRPLLDLMQTVPTFVYLI
PTLTLFGLGVVPGLISTVIFAVAAPIRLTCLGIQDVPAELLDAGKAFGCSRWQLLTRIELPHAMPSIAAGIT
QCIMLSLSMVVIAALVGADGLGKPVVNALNTADISLGFEAGLAIVLLAILLDRVCKQRAVKGK*
AnnotationID:2844GeneID:2836
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative BC-type proline/glycine betaine transport system, permease component
Cell Localization:()
Synonyms:PA5377
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4176
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54007.1| (AE016857) glycine/betaine/L-proline ABC transporter, permease
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 281

 Score =  447 bits (1151), Expect = e-125
 Identities = 224/275 (81%), Positives = 243/275 (88%)

>gb|AAN65926.1|AE016220_8 (AE016775) glycine betaine/L-proline ABC transporter, permease
           protein [Pseudomonas putida KT2440]
          Length = 281

 Score =  442 bits (1138), Expect = e-124
 Identities = 220/271 (81%), Positives = 242/271 (89%)

>gb|AAO06981.1|AE016808_1 (AE016808) ABC-type proline/glycine betaine transport system,
           permease component [Vibrio vulnificus CMCP6]
          Length = 266

 Score =  329 bits (844), Expect = 9e-90
 Identities = 167/255 (65%), Positives = 201/255 (78%)






 
Structural Features:
COG4176, ProW, ABC-type proline/glycine betaine transport system, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 290 residues,  95.9% aligned
Score =  336 bits (863), Expect = 2e-93
Identities = 152/279 (54%), Positives = 195/279 (69%), Gaps = 1/279 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22818




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34724




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2386_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2836
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4597
                           PA5377_tr
                           translation of PA5377
                           279
                           99.99
                           99.99
                           0
                           1416.0
     

     
     
132441
                           gb|AAG08762.1|AE004950_5
                           (AE004950) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           279
                           99.99
                           99.99
                           0
                           1416.0
     

     
     
132442
                           gb|AAO54007.1|
                           (AE016857) glycine/betaine/L-proline ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           79.78
                           86.52
                           4
                           1147.0
     

     
     
132443
                           gb|AAN65926.1|AE016220_8
                           (AE016775) glycine betaine/L-proline ABC transporter, permease protein [Pseudomonas putida KT2440]
                           282
                           78.72
                           87.23
                           4
                           1137.0
     

     
     
132444
                           dbj|BAC62453.1|
                           (AP005087) putative permease of ABC transporter [Vibrio parahaemolyticus]
                           280
                           64.64
                           76.78
                           1
                           903.0
     

     






      

          
GC ORFID: 45838How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5377Glimmer Score: 

          
Start: 5592040Stop: 5591201

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5377 translation of PA5377Homolog Bit Score 550.0

          
Other Homologs:  t_PA5095 (ORF: BLASTX 213.0), psyr_15may02_Scaffold6_revised_gene6900 (ORF: BLASTX 213.0), t_PA5377 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCTGACTGATCACAAGCTCCCGCTGGGAGAGCAGATCGCCGGTTTCGTCGACTGGCTGACCCTGCAT 
GGCGCATCGTTCTTCGACAAGATCTCCGACACCCTGGAGTTCCTCATCCATGGCGTCACCAACGGCTTGCTC 
TGGTTCAACCCGTTGGTGCTGATCGCCTTGCTGGTAGGGCTGGTGCATTTCATCCAGCGCAGCTGGGGGCTG 
ACCGTGTTCGCCCTGGCCTCGTTGCTGCTGATCCTCAACCTGGGCTACTGGCAGGAGACCATGGAAACCCTC 
GCCCAGGTGATATTCGCCACCCTGGTGTGCATCGCCGTGGGCGTGCCGCTGGGCATCGTCGCCGCGCACAAG 
CCGTGGTTCTACACCGCGCTGCGGCCGTTGCTGGACCTGATGCAGACGGTACCGACCTTCGTCTACCTGATC 
CCGACCCTGACCCTGTTCGGTCTCGGCGTGGTGCCGGGCCTGATCTCCACGGTGATCTTCGCCGTCGCCGCG 
CCGATCCGCCTGACCTGCCTGGGTATCCAGGACGTGCCGGCGGAGCTGCTCGACGCCGGCAAGGCCTTCGGC 
TGCTCGCGCTGGCAACTGCTCACGCGCATCGAGCTGCCGCACGCGATGCCGAGCATCGCCGCCGGCATCACC 
CAATGCATCATGCTCTCCCTGTCGATGGTGGTGATCGCCGCGCTGGTCGGCGCCGATGGCCTCGGCAAGCCG 
GTGGTGAACGCGCTGAACACCGCCGACATCTCCCTCGGCTTCGAAGCCGGCCTGGCCATCGTCCTGCTCGCC 
ATCCTGCTCGACCGGGTGTGCAAGCAGCGCGCCGTGAAGGGGAAATAA