ViewGene
Locus Name:
GeneID:
Location:

GeneID:2833
TrivialName: PA14_34780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34780
PAO1 Ortholog Locus:PA2308
Sequence Length:849
Protein Length:282
Start: 3088331
Stop: 3089179
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05696.1|AE004657_3 (AE004657) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 280/282 (99%), Positives = 280/282 (99%)
Sequence:
ATGAACGCCGCCTCCCGCCAACCTTCCACGCTCCCCGCCGACGCCCTGCTGGCGGTGGACGGAGTCAGCCTC
GAATACCGCACCCGCTCGCGCGTGGTGCGGGCCACCCAGCGGGTCAGCTTCGAAGTCGACCCGGCCGATCGC
TTCGTCCTGCTCGGCCCGTCCGGCTGCGGCAAGTCGACCCTGCTCAAGGCGGTGGCTGGCTTCATCACGCCC
AGCGAGGGCGAGATCCGCCTTCAGGGACAGGCGGTCAGGGCGCCCGGCCCCGACCGTATCGTGGTGTTCCAG
GAGTTCGACCAGTTGCCGCCATGGAAGACCGTACGGCAGAACGTGCTGTTTCCCTTGCGGGTGTCCGGCCAG
GTGGCGCGCGACGAGGCCGAGCGACGCGCCGACGAATGCCTCGAGAAGGTCGGCCTGGCGGGCTTCGCCGAG
GCCTACCCGCACACGCTGTCCGGGGGCATGAAGGCGCGGGTGGCGATCGCCCGGGCGCTGGCGATGCAGCCG
AAGATCCTGCTGATGGACGAGCCGTTCGCCGCGCTGGACGCGCTGACCCGGCGAAAGATGCAGGAAGAGCTG
CTGCGCCTGTGGGAAGAGGTGCGTTTCACCCTGCTGTTCGTCACCCATTCCATCGAGGAGGCGTTGGTGGTG
GGCAACCGCATCCTGCTGCTCTCGCCGCACCCGGGGCGGGTCCGGGCCGAAGTGCACGGCCACCCGTTCGGG
CTGCACAGCCTGGGTGGCGAAGCGCTGCAAGCCGCGGCGCGACGCATCCACCGCTTGCTGTTCGACGAGGGC
GGCGAACCGACGGCGGCCGCGACCCTCGACTTCGCCGACATCCGTCTGGCCCACTGA
Translation:
MNAASRQPSTLPADALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFITP
SEGEIRLQGQAVRAPGPDRIVVFQEFDQLPPWKTVRQNVLFPLRVSGQVARDEAERRADECLEKVGLAGFAE
AYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLRLWEEVRFTLLFVTHSIEEALVV
GNRILLLSPHPGRVRAEVHGHPFGLHSLGGEALQAAARRIHRLLFDEGGEPTAAATLDFADIRLAH*
AnnotationID:2841GeneID:2833
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter ATP-binding component
Cell Localization:()
Synonyms:PA2308
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1116,COG4525,cd00267,pfam00005
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65804.1|AE016209_3 (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  423 bits (1087), Expect = e-118
 Identities = 220/274 (80%), Positives = 232/274 (84%)

>gb|AAM35716.1| (AE011714) ABC transporter ATP-binding component [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 277

 Score =  369 bits (948), Expect = e-102
 Identities = 183/247 (74%), Positives = 211/247 (85%)

>emb|CAE44109.1| (BX640422) ABC transporter ATP-binding protein [Bordetella
           pertussis]
          Length = 271

 Score =  367 bits (941), Expect = e-101
 Identities = 185/250 (74%), Positives = 209/250 (83%)








 
Structural Features:
COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 248 residues, 100.0% aligned
Score =  281 bits (721), Expect = 5e-77
Identities = 118/254 (46%), Positives = 157/254 (61%), Gaps = 6/254 (2%)

COG4525, TauB, ABC-type taurine transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  88.8% aligned
Score =  215 bits (548), Expect = 5e-57
Identities = 111/237 (46%), Positives = 146/237 (61%), Gaps = 9/237 (3%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  98.6% aligned
Score =  177 bits (450), Expect = 2e-45
Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 15/223 (6%)

pfam00005, ABC_tran, ABC transporter. 
CD-Length = 183 residues,  96.7% aligned
Score =  153 bits (388), Expect = 2e-38
Identities = 78/180 (43%), Positives = 113/180 (62%), Gaps = 8/180 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5669




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22812




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32482




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2833_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2833
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4580
                           PA2308_tr
                           translation of PA2308
                           282
                           99.29
                           99.29
                           0
                           1416.0
     

     
     
131759
                           gb|AAG05696.1|AE004657_3
                           (AE004657) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           282
                           99.29
                           99.29
                           0
                           1416.0
     

     
     
131760
                           gb|AAN65804.1|AE016209_3
                           (AE016774) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           287
                           77.35
                           81.88
                           5
                           1081.0
     

     
     
131761
                           gb|AAO58623.1|
                           (AE016874) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           286
                           75.52
                           81.81
                           4
                           1058.0
     

     
     
131765
                           emb|CAE35360.1|
                           (BX640452) ABC transporter ATP-binding protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           286
                           67.83
                           76.22
                           19
                           939.0
     

     






      

          
GC ORFID: 45835How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2308Glimmer Score: 

          
Start: 1865585Stop: 1864737

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2308 translation of PA2308Homolog Bit Score 550.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3249 (ORF: BLASTX 409.0), t_PA0184 (ORF: BLASTX 184.0), t_PA3514 (ORF: BLASTX 178.0), t_PA3937 (ORF: BLASTX 166.0), t_PA2329 (ORF: BLASTX 154.0), psyr_15may02_Scaffold7_revised_gene7016 (ORF: BLASTX 147.0), t_PA3442 (ORF: BLASTX 141.0), psyr_15may02_Scaffold8_revised_gene7773 (ORF: BLASTX 139.0), t_PA3447 (ORF: BLASTX 137.0), psyr_15may02_Scaffold6_revised_gene6502 (ORF: BLASTX 137.0), psyr_15may02_Scaffold5_revised_gene6172 (ORF: BLASTX 131.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 118.0), t_PA2308 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCGCCTCCCGCCAACCTTCCACGCTCCCCGCCGACGCCCTGCTGGCGGTGGACGGAGTCAGCCTC 
GAATACCGCACCCGCTCGCGCGTGGTGCGGGCCACCCAGCGGGTCAGCTTCGAAGTCGACCCGGCCGATCGC 
TTCGTCCTGCTCGGCCCGTCCGGCTGCGGCAAGTCGACCCTGCTCAAGGCGGTGGCTGGCTTCATCACGCCC 
AGCGAGGGCGAGATCCGCCTTCAGGGACAGGCGGTCAGGGCGCCCGGCCCCGACCGTATCGTGGTGTTCCAG 
GAGTTCGACCAGTTGCCGCCATGGAAGACCGTACGGCAGAACGTGCTGTTTCCCTTGCGGGTGTCCGGCCAG 
GTGGCGCGCGACGAGGCCGAGCGACGCGCCGACGAATGCCTCGAGAAGGTCGGCCTGGCGGGCTTCGCCGAG 
GCCTACCCGCACACGCTGTCCGGGGGCATGAAGGCGCGGGTGGCGATCGCCCGGGCGCTGGCGATGCAGCCG 
AAGATCCTGCTGATGGACGAGCCGTTCGCCGCGCTGGACGCGCTGACCCGGCGAAAGATGCAGGAAGAGCTG 
CTGCGCCTGTGGGAAGAGGTGCGTTTCACCCTGCTGTTCGTCACCCATTCCATCGAGGAGGCGTTGGTGGTG 
GGCAACCGCATCCTGCTGCTCTCGCCGCACCCGGGGCGGGTCCGGGCCGAAGTGCACGGCCACCCGTTCGGG 
CTGCACAGCCTGGGTGGCGAAGCGCTGCAAGCCGCGGCGCGACGCATCCACCGCTTGCTGTTCGACGAGGGC 
GGCGAACCGACGGCGGCCGCGACCCTCGACTTCGCCGACATCCGTCTGGCCCACTGA