ViewGene

Locus Name:
GeneID:
Location:

GeneID:2831
TrivialName: PA14_09930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09930
PAO1 Ortholog Locus:PA4172
Sequence Length:801
Protein Length:266
Start: 854207
Stop: 853407
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07559.1|AE004833_10 (AE004833) probable nuclease [Pseudomonas aeruginosa PAO1]
Identities = 264/266 (99%), Positives = 266/266 (100%)
Sequence:
GTGGACACCCTGAAGATCGCCACCTTCAACGTCAACGGCATCCAGACCCGGCTGGCCGCGCTGCTGGCCTGG
CTGGAGCGGGAAGCGCCGGACATCGTCTGCCTGCAGGAACTGAAGACGCCCGACGCGCGCTTCCCCGCCGCG
GCGCTGGAGAGGGCCGGATACGGCGCGATCTGGCAGGGCCAGTCGGCGTGGAACGGCGTCGCCATCCTCGCC
CGCGACAGCCAGCCGCTGGAGGTACGCCGCGGCCTGCCGGGCAACGCCAGCGATCCCCACAGCCGCTACCTC
GAAGCGGCCGTCGACGGCCTGCTGGTGGCCAGTCTTTACCTGCCCAATGGCAATCCCCAGCCGGGACCGAAG
TTCGACTACAAGCTGGCCTGGTTCGAGCACCTCATCCGCCACGCCGCCGAGCTGATGGAGAGCGGCCATCCG
GTGGTGCTGGCCGGCGACTTCAACGTGGTGCCCAGCGACTTCGATATCTACGACACCCGCTCCTGGAAAAAG
GACGCCCTGCTCCAGCCGGAGTCCCGCGAGTGCTTCGAGCGCCTCCTGCGGCAGGGCTGGGTGGACGCGCTA
CGCCAGCGTTTCCCCGACCGGCGCATCTATACCTTCTGGGACTACTTCCGCCAGCACTGGCAACGCGACGCC
GGGCTGCGCATCGACCACCTGCTGCTCAGCGCCAGCCTGGCGGACCACCTGGAAGACGCCGGGGTGGATCGC
TGGGTGCGCGGCGAGGAGCACGCCAGCGACCACGCACCGGCCTGGGTAAGCCTGCGGCGTCCCTCAGAGCCC
CGGCGCTAG
Translation:
MDTLKIATFNVNGIQTRLAALLAWLEREAPDIVCLQELKTPDARFPAAALERAGYGAIWQGQSAWNGVAILA
RDSQPLEVRRGLPGNASDPHSRYLEAAVDGLLVASLYLPNGNPQPGPKFDYKLAWFEHLIRHAAELMESGHP
VVLAGDFNVVPSDFDIYDTRSWKKDALLQPESRECFERLLRQGWVDALRQRFPDRRIYTFWDYFRQHWQRDA
GLRIDHLLLSASLADHLEDAGVDRWVRGEEHASDHAPAWVSLRRPSEPRR*
AnnotationID:2839GeneID:2831
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative exonuclease III
Cell Localization:()
Synonyms:PA4172
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0708,pfam03372
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68315.1|AE016465_8 (AE016784) exodeoxyribonuclease III, putative [Pseudomonas putida
           KT2440]
          Length = 265

 Score =  388 bits (997), Expect = e-107
 Identities = 182/258 (70%), Positives = 206/258 (79%)

>gb|AAM36892.1| (AE011838) exodeoxyribonuclease III [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 330

 Score =  361 bits (926), Expect = 3e-99
 Identities = 170/260 (65%), Positives = 200/260 (76%)

>emb|CAC46228.1| (AL591788) PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN [Sinorhizobium
           meliloti]
          Length = 264

 Score =  350 bits (897), Expect = 6e-96
 Identities = 160/255 (62%), Positives = 192/255 (75%)

Structural Features:
COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]
CD-Length = 261 residues,  99.6% aligned
Score =  307 bits (788), Expect = 1e-84
Identities = 120/261 (45%), Positives = 160/261 (61%), Gaps = 6/261 (2%)

pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family.
CD-Length = 252 residues, 100.0% aligned
Score =  110 bits (276), Expect = 1e-25
Identities = 72/267 (26%), Positives = 102/267 (38%), Gaps = 27/267 (10%)
Genomic Context:
Comment:
ReferenceID:14675
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22808
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36907
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2831_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2831

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4578 PA4172_tr translation of PA4172 266 99.24 99.99 0 1421.0
131722 gb|AAG07559.1|AE004833_10 (AE004833) probable nuclease [Pseudomonas aeruginosa PAO1] 266 98.87 99.99 0 1418.0
131723 gb|AAN68315.1|AE016465_8 (AE016784) exodeoxyribonuclease III, putative [Pseudomonas putida KT2440] 268 68.28 77.61 5 990.0
131728 emb|CAC49796.1| (AL603646) probable exodeoxyribonuclease III protein [Sinorhizobium meliloti] 266 60.90 74.06 9 887.0
131726 dbj|BAC49334.1| (AP005950) exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110] 266 60.90 72.93 10 893.0
GC ORFID: 45833How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4172Glimmer Score:
Start: 4099730Stop: 4100530
Length: 801
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4172 translation of PA4172Homolog Bit Score 551.0
Other Homologs: t_PA4172 (ORF: GLIMMER)
GC ORF Sequence
GTGGACACCCTGAAGATCGCCACCTTCAACGTCAACGGCATCCAGACCCGGCTGGCCGCGCTGCTGGCCTGG
CTGGAGCGGGAAGCGCCGGACATCGTCTGCCTGCAGGAACTGAAGACGCCCGACGCGCGCTTCCCCGCCGCG
GCGCTGGAGAGGGCCGGATACGGCGCGATCTGGCAGGGCCAGTCGGCGTGGAACGGCGTCGCCATCCTCGCC
CGCGACAGCCAGCCGCTGGAGGTACGCCGCGGCCTGCCGGGCAACGCCAGCGATCCCCACAGCCGCTACCTC
GAAGCGGCCGTCGACGGCCTGCTGGTGGCCAGTCTTTACCTGCCCAATGGCAATCCCCAGCCGGGACCGAAG
TTCGACTACAAGCTGGCCTGGTTCGAGCACCTCATCCGCCACGCCGCCGAGCTGATGGAGAGCGGCCATCCG
GTGGTGCTGGCCGGCGACTTCAACGTGGTGCCCAGCGACTTCGATATCTACGACACCCGCTCCTGGAAAAAG
GACGCCCTGCTCCAGCCGGAGTCCCGCGAGTGCTTCGAGCGCCTCCTGCGGCAGGGCTGGGTGGACGCGCTA
CGCCAGCGTTTCCCCGACCGGCGCATCTATACCTTCTGGGACTACTTCCGCCAGCACTGGCAACGCGACGCC
GGGCTGCGCATCGACCACCTGCTGCTCAGCGCCAGCCTGGCGGACCACCTGGAAGACGCCGGGGTGGATCGC
TGGGTGCGCGGCGAGGAGCACGCCAGCGACCACGCACCGGCCTGGGTAAGCCTGCGGCGTCCCTCAGAGCCC
CGGCGCTAG