ViewGene
Locus Name:
GeneID:
Location:

GeneID:283
TrivialName: PA14_42670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42670
PAO1 Ortholog Locus:PA1689
Sequence Length:2103
Protein Length:700
Start: 3796552
Stop: 3794450
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05078.1|AE004596_4 (AE004596) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 694/700 (99%), Positives = 696/700 (99%)
Sequence:
ATGGACCAAACGGAAGTCCGAACCACCCAATCGCCCCCACGGCTGTTCCAGCCCACCATCCGCAGCCACCTG
GCGTTCACCGCGCTCAGCGCGCTGGTGCTGCTGGTCATGTTCAGCCTGCTGCGCCTGGCCTTGCTGATCTAC
AACCGCGAACTGATCGGCGCGACCTCGGCGAGCACCTTCCTCGAGGCGTTCGGCAACGGCGTGCGTTTCGAC
CTGCGGGTCGTCGTCTATGCCGTGGCGCCGCTGGTGCTGTCGCTGTTCGCGGTACGCGCGATGGCCGCTCGC
GGCCTGTTCCGTACATGGTTGACGCTGTTCGCCAGCATCACCCTGTTCCTCGGCGTACTCGAACTGGACTTC
TACCGCGAGTTCCACCAGCGCCTGAACAGCCTGGTCTTCCAGTACATGTCGGAAGACCCGAAGACCGTCATG
AGCATGCTCTGGTACGGCTTCCCGGTGGTCCGCTACCTGCTGGCCTGGGCCTTCGCCACCTGGGTGCTGTAC
CGGGTGTTCAAGGCCATCGACCTGGCGACCCGCCCGAGCCAGCGCAAGCCGCGCGAAGACAGCGTGATCGCC
CGGCCGGGCGCTGCCGCGCCCTGGTACGTGCGCGGCGTGGTGCTGTTCCTCTGCGTGCTGGTCTGCGTCCTC
GCCGCCCGCGGCACCCTGCGCCAGGGCCCGCCGCTGCGCTGGGGCGATGCCTTCACCACCGAATCCATGTTC
GCCAACCAACTGGGCCTGAACGGCACCCTGACCCTGGTCAAGGCGGCCAAGGAGCGCTTCTCCGAAGACCGC
GCGAACATCTGGAAGGCCACCCTGGACGACAAGGTCGCCCTGGAGACCACCCGGCAGATGTTGCTGACCCCC
AACGACAAGCTGGTGGACGCCGATGAGGCCGCGGTGCGCCGTGAGTTCACCCCGCCGGCGGCGAATACCCTG
CCGATCCGCAACGTGGTGGTGGTCCTGCTGGAAAGCTTCGCCGGCCACTATGTCGGCGCCCTGGGCGCGCCG
GGCAACATCACGCCGTATTTCGACAAGCTGTCGAAGGAAGGCCTGCTGTTCACCCAGTTCTTCTCCAACGGC
ACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCGGGCTTCGAATACCTGATG
CAAACTCCGGAGGGCGGCCACAAGTTCTCCGGCCTGCCGCAGTTGCTCAGCGCCCGCCAGTACGAGGACGTC
TACGTCTACAACGGCGATTTCGCCTGGGACAACCAGTCCGGCTTCTTCAGCAACCAGGGCATGACCACCTTC
ATCGGCCGCAACGACTATGTCGACCCGGTGTTCTCCGATCCGACCTGGGGCGTCTCCGACCAGGACATGTTC
GCCCGTGGCAACGAGGAGCTGGACAAGCTGGCGAGCACCGGCAAGCCGTTCTATGCGCTGTTGCAGAGCCTC
TCCAACCACGTGCCCTACGCGTTGCCGAAGGACCTGCCGGTGGAGCGCGTGACCGGCTACGGTTCGCTCGAC
GAGCACCTGACCGCCATGCGCTATTCCGACTGGGCGCTGGGCCAGTTCTTCGAGAAGGCGAAGAAGTCGCCG
TACTACAAGGACACCCTTTTCGTGGTGGTCGGCGACCATGGCTTCGGCAGCCCCGAGCAGCTCACCGAGATG
GACCTGCACCGCTTCAACGTGCCGCTGCTGCTGATCGCCCCCGGCATCCAGGAGAAGTTCGGTACCCACCTG
CCGACCGTCGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCTGCTCGGCGGCGAGACCGTCCACCAG
TGCTGGGGCCGCGACCTGCTGAACCTGCCGGAAGGCGACAAGGGCTTCGGCGTGATCAAGCCGTCGGGCAGC
GAGCAGAACGTCGCCATCGTCTCCGGCAACCGCATCCTGGTGCGGCCGAAGGACGGTGACGTGCGCGTCTAC
GATTACCAGCTGGGCGGCGATGCCAAGGCGGTGATCACCAAGGACGTACCGGACCAGGCCGAGCTACAGAAG
AAGCTGGAGTCGTTCATCCAGACCGCGACCAAGAGCCTGCTGGACAATACCGCGGGCGTGGTACACGGGATC
CCGGACAAGGACTGA
Translation:
MDQTEVRTTQSPPRLFQPTIRSHLAFTALSALVLLVMFSLLRLALLIYNRELIGATSASTFLEAFGNGVRFD
LRVVVYAVAPLVLSLFAVRAMAARGLFRTWLTLFASITLFLGVLELDFYREFHQRLNSLVFQYMSEDPKTVM
SMLWYGFPVVRYLLAWAFATWVLYRVFKAIDLATRPSQRKPREDSVIARPGAAAPWYVRGVVLFLCVLVCVL
AARGTLRQGPPLRWGDAFTTESMFANQLGLNGTLTLVKAAKERFSEDRANIWKATLDDKVALETTRQMLLTP
NDKLVDADEAAVRREFTPPAANTLPIRNVVVVLLESFAGHYVGALGAPGNITPYFDKLSKEGLLFTQFFSNG
THTHQGMFATMACFPNLPGFEYLMQTPEGGHKFSGLPQLLSARQYEDVYVYNGDFAWDNQSGFFSNQGMTTF
IGRNDYVDPVFSDPTWGVSDQDMFARGNEELDKLASTGKPFYALLQSLSNHVPYALPKDLPVERVTGYGSLD
EHLTAMRYSDWALGQFFEKAKKSPYYKDTLFVVVGDHGFGSPEQLTEMDLHRFNVPLLLIAPGIQEKFGTHL
PTVGTQVDIVPTIMGLLGGETVHQCWGRDLLNLPEGDKGFGVIKPSGSEQNVAIVSGNRILVRPKDGDVRVY
DYQLGGDAKAVITKDVPDQAELQKKLESFIQTATKSLLDNTAGVVHGIPDKD*
AnnotationID:293GeneID:283
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 15:03:53
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1689
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1368,pfam00884
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55574.1| (AE016863) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 695

 Score = 1002 bits (2591), Expect = 0.0
 Identities = 497/680 (73%), Positives = 556/680 (81%), Gaps = 5/680 (0%)

>gb|AAN68582.1|AE016489_13 (AE016785) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 550

 Score =  687 bits (1774), Expect = 0.0
 Identities = 343/539 (63%), Positives = 417/539 (77%), Gaps = 10/539 (1%)






 
Structural Features:
COG1368, MdoB, Phosphoglycerol transferase and related proteins, 
alkaline phosphatase superfamily 
[Cell envelope biogenesis, outer membrane]
CD-Length = 650 residues, 100.0% aligned
Score =  337 bits (864), Expect = 4e-93
Identities = 184/713 (25%), Positives = 265/713 (37%), Gaps = 79/713 (11%)

pfam00884, Sulfatase, Sulfatase.
CD-Length = 329 residues,  87.8% aligned
Score =  181 bits (460), Expect = 2e-46
Identities = 78/296 (26%), Positives = 121/296 (40%), Gaps = 19/296 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37164




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:283_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:283
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
468
                           PA1689_tr
                           translation of PA1689
                           700
                           99.14
                           99.42
                           0
                           3620.0
     

     
     
24425
                           gb|AAG05078.1|AE004596_4
                           (AE004596) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           700
                           99.14
                           99.42
                           0
                           3620.0
     

     
     
24427
                           gb|AAO55574.1|
                           (AE016863) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           708
                           70.76
                           79.66
                           21
                           2590.0
     

     
     
24426
                           gb|AAN67457.1|AE016372_12
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           708
                           70.19
                           80.08
                           31
                           2607.0
     

     
     
24428
                           gb|AAD32694.1|AF143948_3
                           (AF143948) hypothetical integral membrane protein [Pseudomonas aeruginosa]
                           702
                           53.56
                           54.55
                           299
                           1989.0
     

     






      

          
GC ORFID: 43285How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1689Glimmer Score: 

          
Start: 1157357Stop: 1159459

          
Length: 2103


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1689 translation of PA1689Homolog Bit Score 1399.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene867 (ORF: BLASTX 1008.0), t_PA1689 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCAAACGGAAGTCCGAACCACCCAATCGCCCCCACGGCTGTTCCAGCCCACCATCCGCAGCCACCTG 
GCGTTCACCGCGCTCAGCGCGCTGGTGCTGCTGGTCATGTTCAGCCTGCTGCGCCTGGCCTTGCTGATCTAC 
AACCGCGAACTGATCGGCGCGACCTCGGCGAGCACCTTCCTCGAGGCGTTCGGCAACGGCGTGCGTTTCGAC 
CTGCGGGTCGTCGTCTATGCCGTGGCGCCGCTGGTGCTGTCGCTGTTCGCGGTACGCGCGATGGCCGCTCGC 
GGCCTGTTCCGTACATGGTTGACGCTGTTCGCCAGCATCACCCTGTTCCTCGGCGTACTCGAACTGGACTTC 
TACCGCGAGTTCCACCAGCGCCTGAACAGCCTGGTCTTCCAGTACATGTCGGAAGACCCGAAGACCGTCATG 
AGCATGCTCTGGTACGGCTTCCCGGTGGTCCGCTACCTGCTGGCCTGGGCCTTCGCCACCTGGGTGCTGTAC 
CGGGTGTTCAAGGCCATCGACCTGGCGACCCGCCCGAGCCAGCGCAAGCCGCGCGAAGACAGCGTGATCGCC 
CGGCCGGGCGCTGCCGCGCCCTGGTACGTGCGCGGCGTGGTGCTGTTCCTCTGCGTGCTGGTCTGCGTCCTC 
GCCGCCCGCGGCACCCTGCGCCAGGGCCCGCCGCTGCGCTGGGGCGATGCCTTCACCACCGAATCCATGTTC 
GCCAACCAACTGGGCCTGAACGGCACCCTGACCCTGGTCAAGGCGGCCAAGGAGCGCTTCTCCGAAGACCGC 
GCGAACATCTGGAAGGCCACCCTGGACGACAAGGTCGCCCTGGAGACCACCCGGCAGATGTTGCTGACCCCC 
AACGACAAGCTGGTGGACGCCGATGAGGCCGCGGTGCGCCGTGAGTTCACCCCGCCGGCGGCGAATACCCTG 
CCGATCCGCAACGTGGTGGTGGTCCTGCTGGAAAGCTTCGCCGGCCACTATGTCGGCGCCCTGGGCGCGCCG 
GGCAACATCACGCCGTATTTCGACAAGCTGTCGAAGGAAGGCCTGCTGTTCACCCAGTTCTTCTCCAACGGC 
ACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCGGGCTTCGAATACCTGATG 
CAAACTCCGGAGGGCGGCCACAAGTTCTCCGGCCTGCCGCAGTTGCTCAGCGCCCGCCAGTACGAGGACGTC 
TACGTCTACAACGGCGATTTCGCCTGGGACAACCAGTCCGGCTTCTTCAGCAACCAGGGCATGACCACCTTC 
ATCGGCCGCAACGACTATGTCGACCCGGTGTTCTCCGATCCGACCTGGGGCGTCTCCGACCAGGACATGTTC 
GCCCGTGGCAACGAGGAGCTGGACAAGCTGGCGAGCACCGGCAAGCCGTTCTATGCGCTGTTGCAGAGCCTC 
TCCAACCACGTGCCCTACGCGTTGCCGAAGGACCTGCCGGTGGAGCGCGTGACCGGCTACGGTTCGCTCGAC 
GAGCACCTGACCGCCATGCGCTATTCCGACTGGGCGCTGGGCCAGTTCTTCGAGAAGGCGAAGAAGTCGCCG 
TACTACAAGGACACCCTTTTCGTGGTGGTCGGCGACCATGGCTTCGGCAGCCCCGAGCAGCTCACCGAGATG 
GACCTGCACCGCTTCAACGTGCCGCTGCTGCTGATCGCCCCCGGCATCCAGGAGAAGTTCGGTACCCACCTG 
CCGACCGTCGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCTGCTCGGCGGCGAGACCGTCCACCAG 
TGCTGGGGCCGCGACCTGCTGAACCTGCCGGAAGGCGACAAGGGCTTCGGCGTGATCAAGCCGTCGGGCAGC 
GAGCAGAACGTCGCCATCGTCTCCGGCAACCGCATCCTGGTGCGGCCGAAGGACGGTGACGTGCGCGTCTAC 
GATTACCAGCTGGGCGGCGATGCCAAGGCGGTGATCACCAAGGACGTACCGGACCAGGCCGAGCTACAGAAG 
AAGCTGGAGTCGTTCATCCAGACCGCGACCAAGAGCCTGCTGGACAATACCGCGGGCGTGGTACACGGGATC 
CCGGACAAGGACTGA