ViewGene

Locus Name:
GeneID:
Location:

GeneID:2829
TrivialName: PA14_34790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34790
PAO1 Ortholog Locus:PA2307
Sequence Length:867
Protein Length:288
Start: 3089196
Stop: 3090062
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05695.1|AE004657_2 (AE004657) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 284/288 (98%), Positives = 285/288 (98%)
Sequence:
ATGAGTCGAGTCACGCGCGTCCGCGAAGAATACGAAATCCAGCTCGAACCCCTGCTGGAGGTCCCCCTGGAG
CGGCGCCTGCCCCTGGGCCAGCGTCTCTGGCAACAGGGCTGGCTGCGCAAGGGGCTGATCCTGGCGCTGCTG
GCGCTGGCCTGGGAGCTGGCGGCGCGGGTCCAGGGCAACGACCTGCTGCTGCCAGGCTTCCTGCAGACGGCC
AGGGCCCTCGGCGAGGGCCTGGCCAGCGGCGAACTGCCGGCCAAGGCGGGGATCTCCCTGCTGGTGCTGTTC
AAGGGCTACCTGCTGGGGATCGTCCTGGCCTTCGTTCTGACCAGCCTGGCGGTCTCCACGCAGTTGGGCCGC
GACCTGCTCGGGACCCTCACGGCGATGTTCAACCCGCTGCCGGCGATCGCGCTGCTGCCGCTGGCGCTGCTC
TGGTTCGGCCTGGGCCAGAACAGCCTGATCTTCGTGCTGGTGCATTCGGTGCTCTGGGCGCTGGCGCTGAAC
ACCTATGCCGGTTTCCTCGGTGTCTCGGAGACCCTGCGCATGGCCGGGCGCAACTACGGCCTGCGCGGCCTG
CGCTTCGTCCTGCTGATCCTGGTGCCGGCGGCGCTGCCGTCGATTCTCGCCGGGCTGAAGATCGGCTGGGCC
TTCGCCTGGCGCACGCTGATCGCCGCGGAACTGGTGTTCGGCGCGAGCAGCGGCAAGGGCGGGCTCGGCTGG
TACATTTTCCAGAACCGCAACGAGCTGTACACCGACAAGGTATTCGCCGGCCTGGCGGTGGTGGTGCTGATC
GGCCTGCTGGTGGAGAACCTGGTGTTCGGCAGCATCGAGCGCCTCACGGTGAAGCGCTGGGGAGTGCAACGC
TAG
Translation:
MSRVTRVREEYEIQLEPLLEVPLERRLPLGQRLWQQGWLRKGLILALLALAWELAARVQGNDLLLPGFLQTA
RALGEGLASGELPAKAGISLLVLFKGYLLGIVLAFVLTSLAVSTQLGRDLLGTLTAMFNPLPAIALLPLALL
WFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETLRMAGRNYGLRGLRFVLLILVPAALPSILAGLKIGWA
FAWRTLIAAELVFGASSGKGGLGWYIFQNRNELYTDKVFAGLAVVVLIGLLVENLVFGSIERLTVKRWGVQR
*
AnnotationID:2837GeneID:2829
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:02
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA2307
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0600
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65805.1|AE016209_4 (AE016774) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  482 bits (1240), Expect = e-135
 Identities = 240/284 (84%), Positives = 262/284 (92%)

>emb|CAE39686.1| (BX640436) ABC transporter permease protein [Bordetella
           parapertussis]
          Length = 293

 Score =  411 bits (1056), Expect = e-114
 Identities = 210/282 (74%), Positives = 237/282 (84%), Gaps = 1/282 (0%)

>emb|CAD18659.1| (AL646085) PROBABLE TRANSMEMBRANEE ABC TRANSPORTER PROTEIN
           [Ralstonia solanacearum]
          Length = 298

 Score =  340 bits (873), Expect = 4e-93
 Identities = 171/265 (64%), Positives = 205/265 (77%)

Structural Features:
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, 
permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  96.1% aligned
Score =  159 bits (403), Expect = 4e-40
Identities = 95/252 (37%), Positives = 127/252 (50%), Gaps = 5/252 (1%)
Genomic Context:
Comment:
ReferenceID:5661
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22804
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32483
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2829_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2829

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4576 PA2307_tr translation of PA2307 288 98.61 98.95 0 1420.0
131502 gb|AAG05695.1|AE004657_2 (AE004657) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 288 98.61 98.95 0 1420.0
131503 gb|AAN65805.1|AE016209_4 (AE016774) ABC transporter, permease protein [Pseudomonas putida KT2440] 288 83.33 90.97 1 1238.0
131504 gb|AAO58622.1| (AE016874) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 288 80.90 87.15 0 1183.0
131507 emb|CAE44108.1| (BX640422) ABC transporter permease protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 293 72.35 81.91 5 1055.0
GC ORFID: 45831How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2307Glimmer Score:
Start: 1864720Stop: 1863854
Length: 867
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2307 translation of PA2307Homolog Bit Score 551.0
Other Homologs: t_PA2307 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCGAGTCACGCGCGTCCGCGAAGAATACGAAATCCAGCTCGAACCCCTGCTGGAGGTCCCCCTGGAG
CGGCGCCTGCCCCTGGGCCAGCGTCTCTGGCAACAGGGCTGGCTGCGCAAGGGGCTGATCCTGGCGCTGCTG
GCGCTGGCCTGGGAGCTGGCGGCGCGGGTCCAGGGCAACGACCTGCTGCTGCCAGGCTTCCTGCAGACGGCC
AGGGCCCTCGGCGAGGGCCTGGCCAGCGGCGAACTGCCGGCCAAGGCGGGGATCTCCCTGCTGGTGCTGTTC
AAGGGCTACCTGCTGGGGATCGTCCTGGCCTTCGTTCTGACCAGCCTGGCGGTCTCCACGCAGTTGGGCCGC
GACCTGCTCGGGACCCTCACGGCGATGTTCAACCCGCTGCCGGCGATCGCGCTGCTGCCGCTGGCGCTGCTC
TGGTTCGGCCTGGGCCAGAACAGCCTGATCTTCGTGCTGGTGCATTCGGTGCTCTGGGCGCTGGCGCTGAAC
ACCTATGCCGGTTTCCTCGGTGTCTCGGAGACCCTGCGCATGGCCGGGCGCAACTACGGCCTGCGCGGCCTG
CGCTTCGTCCTGCTGATCCTGGTGCCGGCGGCGCTGCCGTCGATTCTCGCCGGGCTGAAGATCGGCTGGGCC
TTCGCCTGGCGCACGCTGATCGCCGCGGAACTGGTGTTCGGCGCGAGCAGCGGCAAGGGCGGGCTCGGCTGG
TACATTTTCCAGAACCGCAACGAGCTGTACACCGACAAGGTATTCGCCGGCCTGGCGGTGGTGGTGCTGATC
GGCCTGCTGGTGGAGAACCTGGTGTTCGGCAGCATCGAGCGCCTCACGGTGAAGCGCTGGGGAGTGCAACGC
TAG