ViewGene

Locus Name:
GeneID:
Location:

GeneID:2827
TrivialName: PA14_48870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48870
PAO1 Ortholog Locus:PA1192
Sequence Length:825
Protein Length:274
Start: 4345081
Stop: 4344257
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04581.1|AE004549_8 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 274/274 (100%), Positives = 274/274 (100%)
Sequence:
ATGGGCACCCTTTCGGTCAATCAGAACAAACTGCAGAAGCGCCTGCGCCGCCTGGCCGGCGAGGCCATCACC
GACTTCAACATGATCGAGGATGGCGACAAGGTCATGGTCTGCCTGTCCGGCGGCAAGGACAGCTACACCATG
CTCGACATCCTGCTCTACCTGCAGAAGGTCGCGCCGATCCGCTTCGAGATCGTTGCGGTGAACATGGACCAG
AAGCAGCCCGGTTTTCCCGAGCATGTCCTGCCGGAGTACCTGAAGTCGATCGGCGTGGAGTACCACATCGTC
GAGAAGGACACTTACTCGGTGGTCAAGGAGAAAATCCCGGAAGGCAAGACCACCTGCTCGCTGTGCTCGCGC
CTGCGCCGCGGCACGCTGTACACCTTCGCCGACGAGATCGGCGCGACCAAGATGGCCCTCGGTCACCATCGC
GACGACATCCTCGAGACCTTCTTCCTCAACATGTTCTACGGCGGCACCCTGAAGGCCATGCCGCCGAAGCTG
CTGGCCGACGACGGGCGCAACGTGGTGATCCGGCCGCTGGCCTATTGCAGCGAGAAGGACATCGAGGCCTAT
TCCCAGCTCAAGGAGTTCCCGATCATCCCCTGCAACCTCTGCGGTTCGCAGGAGAACCTGCAGCGCCAGGTG
GTCAAGGAAATGCTGCTGGAATGGGAACGCAAGTCGCCGGGGCGTACCGAGATCATGTTCCGCGCCCTGCAG
AACGTGGTGCCGTCGCAACTGGCCGACCGCAACCTGTTCGACTTCGCCAACCTGCGCATCGACGAGAACGCC
ACGCCGCGCTTCCTCGACGTGATGAACCTCTGA
Translation:
MGTLSVNQNKLQKRLRRLAGEAITDFNMIEDGDKVMVCLSGGKDSYTMLDILLYLQKVAPIRFEIVAVNMDQ
KQPGFPEHVLPEYLKSIGVEYHIVEKDTYSVVKEKIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHR
DDILETFFLNMFYGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQLKEFPIIPCNLCGSQENLQRQV
VKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLFDFANLRIDENATPRFLDVMNL*
AnnotationID:2835GeneID:2827
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 14:02:53
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase of the PP-loop superfamily
Cell Localization:()
Synonyms:PA1192, ydaO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0037
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC59796.1| (AP005078) putative ATPase [Vibrio parahaemolyticus]
          Length = 297

 Score =  406 bits (1043), Expect = e-113
 Identities = 186/257 (72%), Positives = 225/257 (87%)

>gb|AAN80282.1|AE016760_141 (AE016760) Hypothetical protein ydaO [Escherichia coli CFT073]
          Length = 311

 Score =  394 bits (1013), Expect = e-109
 Identities = 184/252 (73%), Positives = 217/252 (86%)

>gb|AAO10958.1|AE016805_215 (AE016805) Predicted ATPase of the PP-loop superfamily implicated
           in cell cycle control [Vibrio vulnificus CMCP6]
          Length = 310

 Score =  394 bits (1012), Expect = e-109
 Identities = 187/255 (73%), Positives = 219/255 (85%)

Structural Features:
COG0037, MesJ, Predicted ATPase of the PP-loop superfamily implicated 
in cell cycle control 
[Cell division and chromosome partitioning]
CD-Length = 205 residues,  95.6% aligned
Score =  201 bits (512), Expect = 2e-52
Identities = 92/256 (35%), Positives = 129/256 (50%), Gaps = 10/256 (3%)
Genomic Context:
Comment:
ReferenceID:5657
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22800
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37576
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2827_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2827

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4573 PA1192_tr translation of PA1192 274 99.99 99.99 0 1421.0
131449 gb|AAG04581.1|AE004549_8 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 274 99.99 99.99 0 1421.0
131450 gb|AAN67262.1|AE016353_2 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 274 88.68 94.89 0 1297.0
131451 gb|AAO55204.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 274 85.40 93.79 0 1254.0
131455 gb|AAN55388.1|AE015676_10 (AE015676) conserved hypothetical protein [Shewanella oneidensis MR-1] 310 63.87 73.54 36 1031.0
GC ORFID: 45829How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1192Glimmer Score:
Start: 608827Stop: 609651
Length: 825
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1192 translation of PA1192Homolog Bit Score 551.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6448 (ORF: BLASTX 494.0), t_PA1192 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCACCCTTTCGGTCAATCAGAACAAACTGCAGAAGCGCCTGCGCCGCCTGGCCGGCGAGGCCATCACC
GACTTCAACATGATCGAGGATGGCGACAAGGTCATGGTCTGCCTGTCCGGCGGCAAGGACAGCTACACCATG
CTCGACATCCTGCTCTACCTGCAGAAGGTCGCGCCGATCCGCTTCGAGATCGTTGCGGTGAACATGGACCAG
AAGCAGCCCGGTTTTCCCGAGCATGTCCTGCCGGAGTACCTGAAGTCGATCGGCGTGGAGTACCACATCGTC
GAGAAGGACACTTACTCGGTGGTCAAGGAGAAAATCCCGGAAGGCAAGACCACCTGCTCGCTGTGCTCGCGC
CTGCGCCGCGGCACGCTGTACACCTTCGCCGACGAGATCGGCGCGACCAAGATGGCCCTCGGTCACCATCGC
GACGACATCCTCGAGACCTTCTTCCTCAACATGTTCTACGGCGGCACCCTGAAGGCCATGCCGCCGAAGCTG
CTGGCCGACGACGGGCGCAACGTGGTGATCCGGCCGCTGGCCTATTGCAGCGAGAAGGACATCGAGGCCTAT
TCCCAGCTCAAGGAGTTCCCGATCATCCCCTGCAACCTCTGCGGTTCGCAGGAGAACCTGCAGCGCCAGGTG
GTCAAGGAAATGCTGCTGGAATGGGAACGCAAGTCGCCGGGGCGTACCGAGATCATGTTCCGCGCCCTGCAG
AACGTGGTGCCGTCGCAACTGGCCGACCGCAACCTGTTCGACTTCGCCAACCTGCGCATCGACGAGAACGCC
ACGCCGCGCTTCCTCGACGTGATGAACCTCTGA