ViewGene
Locus Name:
GeneID:
Location:

GeneID:2826
TrivialName: PA14_53670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53670
PAO1 Ortholog Locus:PA0820
Sequence Length:813
Protein Length:270
Start: 4760960
Stop: 4760148
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04209.1|AE004517_4 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/270 (99%), Positives = 269/270 (99%)
Sequence:
ATGCCCGCCGTTATCGCTGAGAATGATGTGTCGATCTGGGACGACGAAACTGGAGCTGTCTACCACTACCCA
AGGCGATACAGCGCCATCCTTAAGCCAGGGGTGCAGGTGGTTTACTACAAGGGCAAGCTGACAGATAAGTCC
TTTGCTGATCAGCGCCTCAGTGCTCAGCCGCATTACTTTGGTATTGCGCGTATCGGCAAGGTTTACCcTGAC
CTTGAAAGCTCGAAAGGTGATCTCTTCGCGtTGATCGAGAGTTTTCAGCCATTTGAGCAGGCAGTCCTGGCA
AAAGAAGGGAATAGCTACCTAGAGCCCATTCCGCCATCGAAGGCCAGCAACTACTGGCGTAGTGGTGTCCGG
GAGATTGGACAGGTCACCTTTGATAGCATCCTGGCAAGGGCCGAGATTAAGCCTTTGCAGGTTGCCGAGAGT
TGGGGCGATAGAGCTTTGGGGGGCTTTGAGTCTCGCACCGAGGGCAGTCTGTCCACCTACTACGGGGTCCGC
TACGAGCGTGACCCAACGCTGCGTCTCCAGGCAATTGCGATTCATGGTGTAGCTTGCAAGGCGTGCGGTTTT
GATTTCGGAAAGGCATACGGCGAGTACGCGAAGGGTTTTATCCACGTTCACCACACGCAGCCCATTTCTGAG
TTCGAAGCCCCCAAAGCCGTGAACCCTGAAACTGACCTGGTGCCCCTCTGTGCAAATTGCCATGCAGTTGTT
CATCGCAGGCGTGATCGAACTCTTAGCGTCGATGAGCTGAAGGGGCTTGTTCGTGGGAGGTGGGTTTGCGCG
GAGGCTGATGTAGTCGTTTAG
Translation:
MPAVIAENDVSIWDDETGAVYHYPRRYSAILKPGVQVVYYKGKLTDKSFADQRLSAQPHYFGIARIGKVYPD
LESSKGDLFALIESFQPFEQAVLAKEGNSYLEPIPPSKASNYWRSGVREIGQVTFDSILARAEIKPLQVAES
WGDRALGGFESRTEGSLSTYYGVRYERDPTLRLQAIAIHGVACKACGFDFGKAYGEYAKGFIHVHHTQPISE
FEAPKAVNPETDLVPLCANCHAVVHRRRDRTLSVDELKGLVRGRWVCAEADVVV*
AnnotationID:2834GeneID:2826
AnnotatorUID: danlee
Modification Date/Time: 2004-04-21 17:05:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0820
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3183
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3183, Predicted restriction endonuclease [Defense mechanisms]
      CD-Length = 272 residues, 100.0% aligned
      Score =  321 bits (824), Expect = 1e-88






   
Genomic Context:






   
Comment:


















    ReferenceID:5655




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22798




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2826
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4572
                           PA0820_tr
                           translation of PA0820
                           270
                           99.62
                           99.62
                           0
                           1419.0
     

     
     
131444
                           gb|AAG04209.1|AE004517_4
                           (AE004517) hypothetical protein PA0820 [Pseudomonas aeruginosa PAO1]
                           270
                           99.62
                           99.62
                           0
                           1419.0
     

     
     
131445
                           gb|AAM33008.1|
                           (AE013592) 5-methylcytosine-specific restriction enzyme A [Methanosarcina mazei Goe1]
                           295
                           27.79
                           42.71
                           63
                           279.0
     

     
     
131446
                           gb|AAM06859.1|
                           (AE011058) Hnh endonuclease [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
                           317
                           26.18
                           39.43
                           85
                           281.0
     

     
     
131447
                           dbj|BAB83496.1|
                           (AB063171) hypothetical protein [Staphylococcus hominis]
                           315
                           19.36
                           32.38
                           149
                           275.0
     

     






      

          
GC ORFID: 45828How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0820Glimmer Score: 

          
Start: 192947Stop: 193759

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0820 translation of PA0820Homolog Bit Score 551.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCCGCCGTTATCGCTGAGAATGATGTGTCGATCTGGGACGACGAAACTGGAGCTGTCTACCACTACCCA 
AGGCGATACAGCGCCATCCTTAAGCCAGGGGTGCAGGTGGTTTACTACAAGGGCAAGCTGACAGATAAGTCC 
TTTGCTGATCAGCGCCTCAGTGCTCAGCCGCATTACTTTGGTATTGCGCGTATCGGCAAGGTTTACCcTGAC 
CTTGAAAGCTCGAAAGGTGATCTCTTCGCGtTGATCGAGAGTTTTCAGCCATTTGAGCAGGCAGTCCTGGCA 
AAAGAAGGGAATAGCTACCTAGAGCCCATTCCGCCATCGAAGGCCAGCAACTACTGGCGTAGTGGTGTCCGG 
GAGATTGGACAGGTCACCTTTGATAGCATCCTGGCAAGGGCCGAGATTAAGCCTTTGCAGGTTGCCGAGAGT 
TGGGGCGATAGAGCTTTGGGGGGCTTTGAGTCTCGCACCGAGGGCAGTCTGTCCACCTACTACGGGGTCCGC 
TACGAGCGTGACCCAACGCTGCGTCTCCAGGCAATTGCGATTCATGGTGTAGCTTGCAAGGCGTGCGGTTTT 
GATTTCGGAAAGGCATACGGCGAGTACGCGAAGGGTTTTATCCACGTTCACCACACGCAGCCCATTTCTGAG 
TTCGAAGCCCCCAAAGCCGTGAACCCTGAAACTGACCTGGTGCCCCTCTGTGCAAATTGCCATGCAGTTGTT 
CATCGCAGGCGTGATCGAACTCTTAGCGTCGATGAGCTGAAGGGGCTTGTTCGTGGGAGGTGGGTTTGCGCG 
GAGGCTGATGTAGTCGTTTAG