ViewGene

Locus Name:
GeneID:
Location:

GeneID:2825
TrivialName: PA14_70810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70810
PAO1 Ortholog Locus:PA5366
Sequence Length:834
Protein Length:277
Start: 6306963
Stop: 6306130
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08751.1|AE004948_7 (AE004948) ATP-binding component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 277/277 (100%), Positives = 277/277 (100%)
Sequence:
ATGCAAAACGAGACCGCCAGCCACGGCATCAACTTCGATGCGCTCGGCCGCGACCGCCAGAGCCTCGACCTG
GCTTCCGAAAGTGTCGAACTGGAAGTGCCCGGGCTGAACCTGTTCTACGGCGCCAAGCAGGCCCTGTTCGAC
GTCCGGATGAACATTCCGAAGCAGCGCGTGACCGCCTTCATCGGCCCGTCCGGCTGCGGCAAGTCGACCCTG
CTGCGCTGCTTCAACCGGATGAACGACCTGGTGGACGGCTGCCGCGTCGAAGGCGAGATCCGCCTCGATGGC
CACAACATCTTCGCCAAGGGCGTCGACGTCGCCGAGCTGCGCCGTCGCGTCGGCATGGTGTTCCAGAAGCCC
AACCCGTTCCCCAAGAGCATCTACGAGAACGTGGTCTACGGCCTGCGTATCCAGGGCATCAACAAGAAGCGC
GTACTTGACGAGGCCGTCGAGTGGGCGCTGAAGGGGGCTGCGCTGTGGGAGGAGGTGAAGGATCGCCTGCAC
GAGTCCGCCCTCGGCCTGTCCGGTGGCCAGCAGCAGCGCCTGGTGATCGCCCGGACCATCGCGGTGGAACCG
GAAGTGCTGCTGCTCGACGAGCCGTGCTCGGCGCTGGACCCGATCTCCACGCTGAAGATCGAAGAGCTGATC
TACGAGTTGAAGTCGAAGTTCACCATCGTCATCGTTACCCACAACATGCAGCAGGCCGCGCGGGTTTCCGAC
TATACGGCGTTCATGTACATGGGCAAGCTGATCGAGTTCGGCGACACCGATACGCTGTTCACCAACCCGGCG
AAGAAGCAGACCGAAGACTACATCACCGGCCGCTACGGCTAG
Translation:
MQNETASHGINFDALGRDRQSLDLASESVELEVPGLNLFYGAKQALFDVRMNIPKQRVTAFIGPSGCGKSTL
LRCFNRMNDLVDGCRVEGEIRLDGHNIFAKGVDVAELRRRVGMVFQKPNPFPKSIYENVVYGLRIQGINKKR
VLDEAVEWALKGAALWEEVKDRLHESALGLSGGQQQRLVIARTIAVEPEVLLLDEPCSALDPISTLKIEELI
YELKSKFTIVIVTHNMQQAARVSDYTAFMYMGKLIEFGDTDTLFTNPAKKQTEDYITGRYG*
AnnotationID:2833GeneID:2825
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 19:07:51
Gene Name:pstB
Confidence Code:1
GeneProduct:phosphate ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1117,COG1126,cd00267,pfam00005
Secondary Functional Category(ies):membrane proteins
EC Number:3.6.3.27
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70891.1|AE016733_3 (AE016794) phosphate ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 281

 Score =  495 bits (1274), Expect = e-139
 Identities = 245/277 (88%), Positives = 263/277 (94%)

>gb|AAO58903.1| (AE016876) phosphate ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 277

 Score =  486 bits (1251), Expect = e-137
 Identities = 240/277 (86%), Positives = 258/277 (93%)

>gb|AAN54779.1|AE015617_14 (AE015617) phosphate ABC transporter, ATP-binding protein
           [Shewanella oneidensis MR-1]
          Length = 264

 Score =  391 bits (1005), Expect = e-108
 Identities = 190/255 (74%), Positives = 222/255 (87%)
Structural Features:
COG1117, PstB, ABC-type phosphate transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 253 residues, 100.0% aligned
Score =  471 bits (1213), Expect = 5e-134
Identities = 185/254 (72%), Positives = 212/254 (83%), Gaps = 1/254 (0%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  97.5% aligned
Score =  200 bits (510), Expect = 2e-52
Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 18/247 (7%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  99.1% aligned
Score =  176 bits (448), Expect = 3e-45
Identities = 88/227 (38%), Positives = 127/227 (55%), Gaps = 15/227 (6%)

pfam00005, ABC_tran, ABC transporter. 
CD-Length = 183 residues,  99.5% aligned
Score =  156 bits (397), Expect = 2e-39
Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Genomic Context:
Comment:
ReferenceID:5653
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22796
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34733
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2825_cdd.html
URL:
ReferenceID:35668
Author/Investigator(s): Nikata T, Sakai Y, Shibat K, Kato J, Kuroda A, Ohtake H.
Title: Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa.
PubMed: 8628229
MedLine:
Source:
Mol Gen Genet. 1996 Apr 10;250(6):692-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8628229
ReferenceID:35669
Author/Investigator(s): Amemura M, Makino K, Shinagawa H, Kobayashi A, Nakata A.
Title: Nucleotide sequence of the genes involved in phosphate transport and regulation of the phosphate regulon in Escherichia coli.
PubMed: 2993631
MedLine:
Source:
J Mol Biol. 1985 Jul 20;184(2):241-50.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2993631
ReferenceID:35670
Author/Investigator(s): Surin BP, Rosenberg H, Cox GB.
Title: Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships.
PubMed: 3881386
MedLine:
Source:
J Bacteriol. 1985 Jan;161(1):189-98.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3881386
Homologs By Global Alignment
Gene ID:2825

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4571 PA5366_tr translation of PA5366 277 99.99 99.99 0 1423.0
131266 gb|AAG08751.1|AE004948_7 (AE004948) ATP-binding component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1] 277 99.99 99.99 0 1423.0
131267 dbj|BAA08137.1| (D45195) a component of the phosphate specific transport complex [Pseudomonas aeruginosa] 277 99.99 99.99 0 1423.0
131269 dbj|BAA75657.1| (AB017356) peripheral membrane protein B [Pseudomonas putida] 277 88.08 94.22 0 1269.0
131268 gb|AAN70891.1|AE016733_3 (AE016794) phosphate ABC transporter, ATP-binding protein [Pseudomonas putida KT2440] 281 87.18 93.59 4 1274.0
GC ORFID: 45827How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5366Glimmer Score:
Start: 5570652Stop: 5569819
Length: 834
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5366 translation of PA5366Homolog Bit Score 552.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4199 (ORF: BLASTX 494.0), psyr_15may02_Scaffold1_revised_gene61 (ORF: BLASTX 319.0), t_PA5366 (ORF: GLIMMER)
GC ORF Sequence
ATGCAAAACGAGACCGCCAGCCACGGCATCAACTTCGATGCGCTCGGCCGCGACCGCCAGAGCCTCGACCTG
GCTTCCGAAAGTGTCGAACTGGAAGTGCCCGGGCTGAACCTGTTCTACGGCGCCAAGCAGGCCCTGTTCGAC
GTCCGGATGAACATTCCGAAGCAGCGCGTGACCGCCTTCATCGGCCCGTCCGGCTGCGGCAAGTCGACCCTG
CTGCGCTGCTTCAACCGGATGAACGACCTGGTGGACGGCTGCCGCGTCGAAGGCGAGATCCGCCTCGATGGC
CACAACATCTTCGCCAAGGGCGTCGACGTCGCCGAGCTGCGCCGTCGCGTCGGCATGGTGTTCCAGAAGCCC
AACCCGTTCCCCAAGAGCATCTACGAGAACGTGGTCTACGGCCTGCGTATCCAGGGCATCAACAAGAAGCGC
GTACTTGACGAGGCCGTCGAGTGGGCGCTGAAGGGGGCTGCGCTGTGGGAGGAGGTGAAGGATCGCCTGCAC
GAGTCCGCCCTCGGCCTGTCCGGTGGCCAGCAGCAGCGCCTGGTGATCGCCCGGACCATCGCGGTGGAACCG
GAAGTGCTGCTGCTCGACGAGCCGTGCTCGGCGCTGGACCCGATCTCCACGCTGAAGATCGAAGAGCTGATC
TACGAGTTGAAGTCGAAGTTCACCATCGTCATCGTTACCCACAACATGCAGCAGGCCGCGCGGGTTTCCGAC
TATACGGCGTTCATGTACATGGGCAAGCTGATCGAGTTCGGCGACACCGATACGCTGTTCACCAACCCGGCG
AAGAAGCAGACCGAAGACTACATCACCGGCCGCTACGGCTAG