ViewGene
Locus Name:
GeneID:
Location:

GeneID:2824
TrivialName: PA14_47280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47280
PAO1 Ortholog Locus:PA1311
Sequence Length:828
Protein Length:275
Start: 4213156
Stop: 4212329
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC45742.1| (U45309) 2-phosphonoacetaldehyde hydrolase [Pseudomonas aeruginosa]
Identities = 275/275 (100%), Positives = 275/275 (100%)
Sequence:
ATGAATTACAACCAGCCAGCCACCCTCCAGGCCGCCATCCTCGACTGGGCGGGAACCGTGGTCGATTTCGGC
TCCTTCGCGCCGACCCAGATATTCGTCGAGGCTTTCGCCGAATTCGGCGTCCAGGTCAGCCTGGAGGAAGCG
CGCGGTCCGATGGGAATGGGCAAGTGGGACCACATCCGCACCCTCTGCGACATCCCGGCGATCGCCGAGCGC
TACCGCGCCGTCTTCGGCCGCCTGCCCAGCGACGACGATGTCACCGCCATCTACGAGCGCTTCATGCCGCTG
CAGATCGAAAAGATCGCCGAACATTCGGCGCTGATCCCCGGCGCCCTGCAGGCGATCGCCGAACTCCGCGGG
ATGGGCCTGAAGATCGGTTCCTGTTCCGGTTATCCGGCGGTGGTGATGGAGAAGGTGGTAGCCCTGGCCGAG
ACCAACGGTTACGTCGCCGACCACGTGGTGGCCACCGACGAAGTGCCCAACGGCCGGCCATGGCCGGCCCAG
GCGCTGGCCAACGTGATCGCCCTGGGGATCGACGATGTGGCGGCCTGCGTGAAGGTCGACGACACCTGGCCG
GGTATCCTCGAAGGGCGCCGCGCCGGGATGTGGACGGTGGCGCTGACCTGCTCGGGCAATGCCCTGGGCCTC
ACCTACGAGCAGTACAAGGCGCTGCCGGCGGCCGAACTGGAGCGCGAGCGGACGCGTATCGAACAGATGTTC
GAAGGTTCGCGTCCGCACTACCTGATCGAGACCATCGCCGAGCTGCCGGCGGTGGTCCGCGACATCAATGCG
CGCCTGGCGCGCGGCGAGATGCCGCAGGGTAACTGA
Translation:
MNYNQPATLQAAILDWAGTVVDFGSFAPTQIFVEAFAEFGVQVSLEEARGPMGMGKWDHIRTLCDIPAIAER
YRAVFGRLPSDDDVTAIYERFMPLQIEKIAEHSALIPGALQAIAELRGMGLKIGSCSGYPAVVMEKVVALAE
TNGYVADHVVATDEVPNGRPWPAQALANVIALGIDDVAACVKVDDTWPGILEGRRAGMWTVALTCSGNALGL
TYEQYKALPAAELERERTRIEQMFEGSRPHYLIETIAELPAVVRDINARLARGEMPQGN*
AnnotationID:2832GeneID:2824
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:29
Gene Name:phnX
Confidence Code:1
GeneProduct:2-phosphonoacetaldehyde hydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0637
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD24489.1| (AJ437001) 2-phosphonoacetaldehyde hydrolase [Pseudomonas putida]
          Length = 275

 Score =  458 bits (1179), Expect = e-128
 Identities = 228/273 (83%), Positives = 238/273 (87%)

>emb|CAE37748.1| (BX640430) putative hydrolase [Bordetella parapertussis]
          Length = 276

 Score =  344 bits (883), Expect = 3e-94
 Identities = 165/267 (61%), Positives = 204/267 (76%)

>gb|AAL19386.1| (AE008715) 2-aminoethylphosphonate transport [Salmonella
           typhimurium LT2]
          Length = 270

 Score =  280 bits (716), Expect = 6e-75
 Identities = 144/266 (54%), Positives = 180/266 (67%), Gaps = 2/266 (0%)






 
Structural Features:
COG0637, Predicted phosphatase/phosphohexomutase
CD-Length = 221 residues,  84.6% aligned
Score =  119 bits (299), Expect = 4e-28
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 15/202 (7%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22794




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37487




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2824_cdd.html


    		




 
URL:

















    ReferenceID:38018




  
Author/Investigator(s):
        Dumora C, Marche M, Doignon F, Aigle M, Cassaigne A, Crouzet M.





  
Title:
        First characterization of the phosphonoacetaldehyde hydrolase gene of Pseudomonas aeruginosa.




  
PubMed:
        9332393


MedLine:
        




    
Source:
Gene. 1997 Sep 15;197(1-2):405-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=9332393&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:2824
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
131249
                           gb|AAC45742.1|
                           (U45309) 2-phosphonoacetaldehyde hydrolase [Pseudomonas aeruginosa]
                           275
                           99.99
                           99.99
                           0
                           1426.0
     

     
     
4570
                           PA1311_tr
                           translation of PA1311
                           275
                           99.63
                           99.99
                           0
                           1422.0
     

     
     
131250
                           gb|AAG04700.1|AE004560_8
                           (AE004560) 2-phosphonoacetaldehyde hydrolase [Pseudomonas aeruginosa PAO1]
                           275
                           99.63
                           99.99
                           0
                           1422.0
     

     
     
131251
                           emb|CAD24489.1|
                           (AJ437001) 2-phosphonoacetaldehyde hydrolase [Pseudomonas putida]
                           275
                           82.90
                           86.54
                           0
                           1176.0
     

     
     
131252
                           gb|AAN67821.1|AE016413_3
                           (AE016782) 2-phosphonoacetaldehyde hydrolase [Pseudomonas putida KT2440]
                           275
                           81.81
                           86.90
                           0
                           1170.0
     

     






      

          
GC ORFID: 45826How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1311Glimmer Score: 

          
Start: 740753Stop: 741580

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1311 translation of PA1311Homolog Bit Score 552.0

          
Other Homologs:  t_PA1311 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTACAACCAGCCAGCCACCCTCCAGGCCGCCATCCTCGACTGGGCGGGAACCGTGGTCGATTTCGGC 
TCCTTCGCGCCGACCCAGATATTCGTCGAGGCTTTCGCCGAATTCGGCGTCCAGGTCAGCCTGGAGGAAGCG 
CGCGGTCCGATGGGAATGGGCAAGTGGGACCACATCCGCACCCTCTGCGACATCCCGGCGATCGCCGAGCGC 
TACCGCGCCGTCTTCGGCCGCCTGCCCAGCGACGACGATGTCACCGCCATCTACGAGCGCTTCATGCCGCTG 
CAGATCGAAAAGATCGCCGAACATTCGGCGCTGATCCCCGGCGCCCTGCAGGCGATCGCCGAACTCCGCGGG 
ATGGGCCTGAAGATCGGTTCCTGTTCCGGTTATCCGGCGGTGGTGATGGAGAAGGTGGTAGCCCTGGCCGAG 
ACCAACGGTTACGTCGCCGACCACGTGGTGGCCACCGACGAAGTGCCCAACGGCCGGCCATGGCCGGCCCAG 
GCGCTGGCCAACGTGATCGCCCTGGGGATCGACGATGTGGCGGCCTGCGTGAAGGTCGACGACACCTGGCCG 
GGTATCCTCGAAGGGCGCCGCGCCGGGATGTGGACGGTGGCGCTGACCTGCTCGGGCAATGCCCTGGGCCTC 
ACCTACGAGCAGTACAAGGCGCTGCCGGCGGCCGAACTGGAGCGCGAGCGGACGCGTATCGAACAGATGTTC 
GAAGGTTCGCGTCCGCACTACCTGATCGAGACCATCGCCGAGCTGCCGGCGGTGGTCCGCGACATCAATGCG 
CGCCTGGCGCGCGGCGAGATGCCGCAGGGTAACTGA