ViewGene
Locus Name:
GeneID:
Location:

GeneID:2823
TrivialName: PA14_02200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02200
PAO1 Ortholog Locus:PA0175
Sequence Length:843
Protein Length:280
Start: 198390
Stop: 197548
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03565.1|AE004455_6 (AE004455) probable chemotaxis protein methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 278/280 (99%), Positives = 278/280 (99%)
Sequence:
ATGCCCACCTCCACGCCTTCGCCGGTGTTCGGCAACCAGGAGTTCCACTACACCCGCGAGGACTTCCAGCAA
GTACGCGAGCGGCTCTACCGGCTGACCGGCATCAGCCTGGCCGAGAGCAAGGCGCAACTGGTCTATAGCCGC
CTCTCGCGGCGCCTGCGCCTGCTGCGGCTCGGCAGCTTCGCCGAATATTTCACCCACCTCGACCGCGAGCCG
GGCGAGCAGCAGTTGTTCGTCAACGCGCTGACCACCAACCTCACCGCATTCTTCCGCGAACGCCACCACTTC
CCCCTGCTCGCCGACCTCGCCCGCCGCCAGTTGCAGCGGCATCGCCCGCTGCGCATCTGGTCGGCGGCGGCG
AGCACCGGCGAGGAACCCTATTCGATCGCCATCACCCTGGTGGAGGCGCTGGGCAGCTTCGATCCGCCGGTG
AAGATCGTCGCCTCGGACATCGACACCGGGGTGCTCGACTGCGCCCGCCTGGGCGTCTATCCGCTGGAGCGC
CTGGAGCAGATGCCGGCGCCGCTGAAGAAACGCTTCTTCCTCCGTGGCACCGGGCCCAACGCCGGCAAGGCG
CGGGTGGTGGAGGAACTGCGGCAACTGGTGGAGTTCCGCCAGATCAACCTGCTGGAAGCGGACTGGTCGATC
GCCGGAGAACTCGACGCGATCTTCTGCCGCAACGTGATGATCTACTTCGACAAGCCGACCCAGACCCGCCTG
CTGGAACGCATGGTGGCCCTGCTGCGGCCGGAGGGCCTGTTCTTCGCCGGGCATTCGGAGAACTTCGTCCAC
GCCAGCCACCTGGTGCGGCCCGTCGGCCAGACCGTCTACAGCCCGGCCTGA
Translation:
MPTSTPSPVFGNQEFHYTREDFQQVRERLYRLTGISLAESKAQLVYSRLSRRLRLLRLGSFAEYFTHLDREP
GEQQLFVNALTTNLTAFFRERHHFPLLADLARRQLQRHRPLRIWSAAASTGEEPYSIAITLVEALGSFDPPV
KIVASDIDTGVLDCARLGVYPLERLEQMPAPLKKRFFLRGTGPNAGKARVVEELRQLVEFRQINLLEADWSI
AGELDAIFCRNVMIYFDKPTQTRLLERMVALLRPEGLFFAGHSENFVHASHLVRPVGQTVYSPA*
AnnotationID:2831GeneID:2823
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis protein methyltransferase
Cell Localization:()
Synonyms:cheR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative glutamate methyltransferase
Functional Category Confidence Code:5
COGs:COG1352,smart00138,pfam01739
Secondary Functional Category(ies):signal transduction mechanism
EC Number:2.1.1.80
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD18556.1| (AL646084) PROBABLE CHEMOTAXIS PROTEIN METHYLTRANSFERASE [Ralstonia
           solanacearum]
          Length = 292

 Score =  291 bits (745), Expect = 3e-78
 Identities = 144/277 (51%), Positives = 195/277 (70%), Gaps = 6/277 (2%)

>gb|AAM41157.1| (AE012289) chemotaxis protein methyltransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 289

 Score =  288 bits (738), Expect = 2e-77
 Identities = 145/283 (51%), Positives = 198/283 (69%), Gaps = 9/283 (3%)








 
Structural Features:
COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 268 residues,  98.5% aligned
Score =  279 bits (714), Expect = 4e-76
Identities = 126/268 (47%), Positives = 163/268 (60%), Gaps = 12/268 (4%)

smart00138, MeTrc, Methyltransferase, chemotaxis proteins
CD-Length = 264 residues,  98.9% aligned
Score =  240 bits (615), Expect = 1e-64
Identities = 114/266 (42%), Positives = 157/266 (59%), Gaps = 12/266 (4%)

pfam01739, CheR, CheR methyltransferase, SAM binding domain.
CD-Length = 195 residues,  99.0% aligned
Score =  190 bits (484), Expect = 2e-49
Identities = 80/197 (40%), Positives = 111/197 (56%), Gaps = 8/197 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5649




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22792




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33542




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2823_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2823
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4569
                           PA0175_tr
                           translation of PA0175
                           280
                           99.28
                           99.28
                           0
                           1425.0
     

     
     
131211
                           gb|AAG03565.1|AE004455_6
                           (AE004455) probable chemotaxis protein methyltransferase [Pseudomonas aeruginosa PAO1]
                           280
                           99.28
                           99.28
                           0
                           1425.0
     

     
     
131217
                           emb|CAE36777.1|
                           (BX640427) chemotaxis protein methyltransferase [Bordetella parapertussis]
                           289
                           52.59
                           64.70
                           12
                           727.0
     

     
     
131216
                           emb|CAE33043.1|
                           (BX640444) chemotaxis protein methyltransferase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           289
                           52.59
                           64.70
                           12
                           727.0
     

     
     
131222
                           gb|AAA27035.1|
                           (J02757) methyltransferase CheR [Salmonella typhimurium]
                           294
                           51.02
                           64.28
                           20
                           688.0
     

     






      

          
GC ORFID: 45825How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0175Glimmer Score: 

          
Start: 5999729Stop: 5998887

          
Length: 843


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0175 translation of PA0175Homolog Bit Score 553.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2549 (ORF: BLASTX 192.0), t_PA0175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACCTCCACGCCTTCGCCGGTGTTCGGCAACCAGGAGTTCCACTACACCCGCGAGGACTTCCAGCAA 
GTACGCGAGCGGCTCTACCGGCTGACCGGCATCAGCCTGGCCGAGAGCAAGGCGCAACTGGTCTATAGCCGC 
CTCTCGCGGCGCCTGCGCCTGCTGCGGCTCGGCAGCTTCGCCGAATATTTCACCCACCTCGACCGCGAGCCG 
GGCGAGCAGCAGTTGTTCGTCAACGCGCTGACCACCAACCTCACCGCATTCTTCCGCGAACGCCACCACTTC 
CCCCTGCTCGCCGACCTCGCCCGCCGCCAGTTGCAGCGGCATCGCCCGCTGCGCATCTGGTCGGCGGCGGCG 
AGCACCGGCGAGGAACCCTATTCGATCGCCATCACCCTGGTGGAGGCGCTGGGCAGCTTCGATCCGCCGGTG 
AAGATCGTCGCCTCGGACATCGACACCGGGGTGCTCGACTGCGCCCGCCTGGGCGTCTATCCGCTGGAGCGC 
CTGGAGCAGATGCCGGCGCCGCTGAAGAAACGCTTCTTCCTCCGTGGCACCGGGCCCAACGCCGGCAAGGCG 
CGGGTGGTGGAGGAACTGCGGCAACTGGTGGAGTTCCGCCAGATCAACCTGCTGGAAGCGGACTGGTCGATC 
GCCGGAGAACTCGACGCGATCTTCTGCCGCAACGTGATGATCTACTTCGACAAGCCGACCCAGACCCGCCTG 
CTGGAACGCATGGTGGCCCTGCTGCGGCCGGAGGGCCTGTTCTTCGCCGGGCATTCGGAGAACTTCGTCCAC 
GCCAGCCACCTGGTGCGGCCCGTCGGCCAGACCGTCTACAGCCCGGCCTGA