ViewGene

Locus Name:
GeneID:
Location:

GeneID:2822
TrivialName: PA14_64500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64500
PAO1 Ortholog Locus:PA4878
Sequence Length:813
Protein Length:270
Start: 5745174
Stop: 5745986
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08263.1|AE004901_5 (AE004901) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 270/270 (100%), Positives = 270/270 (100%)
Sequence:
ATGCTCACCATCGGCCAACTGGCGCGAATCTTCGAGATCTCCACCAAGACGCTTCGCCACTACGATGCCATC
GGCCTGTTCGTCCCCGCGCGCACCGGTAGCGACAACGGCTACCGCTACTACCAGCCGGAACAGATCGAGCAG
CTCTCGCGCATACTCGCGCTGCGCCGGCTGGACGTTCCGCTGGAAGCCATCGACCGCCTGAAACGCGATGGC
GCGCTGGACGACCCGCAACGCCTGCGGCATTTCCTGCAACGACACCAGCACACCCTGCGCGAAGAAATAAGC
GCCCGCCAGCGCCTGCTGGCGGAACTCGACCGAACCCTGGCGACGCTCGCCCACTGGAGGATCCGCAACATG
CATGCACGAATCGTCGAACGTCCCGCCTTCAGCGTGGTGGGCATGGAATACTTCGGCAGCGCCCCCGGCGAC
ACCATCGGCCAGCTCTGGGAGCGCTTCATCCCGCGCGAGCACGAGATCGCTGGCAAGCACGATCCCGAGGTC
TCCTATGGCATCTGCGCGCAGCAGCCCAACGGTGAATTCCACTACGTCGCCGGCTTCGAGGTGCAGGAAGGC
TGGCCGGTGCCGGAGGGCATGGTGCGCTTCCAGGTGCCGGCGCAGAAGTACGCGGTGTTCACCCACAAGGGC
ACGGCGCCGCAGATCGCCGAGAGCTTCCAGGCGATCTACAGCCACCTGCTCGCCGAACGCGGCCTGGAGCCC
AAGGCGGGGGTCGACTTCGAATACTACGACCAGCGTTTCCGCGGACCGCTGGATCCGAACTCGCAAGTCGAC
CTGTATATCCCCATCTACTGA
Translation:
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDG
ALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGD
TIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKG
TAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY*
AnnotationID:2830GeneID:2822
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4878
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01107,pfam06445
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd01107, HTH_BmrR, Helix-turn-helix tanscription regulator BmrR. 
CD-Length = 264 residues, 100.0% aligned
Score =  203 bits (517), Expect = 2e-53

pfam06445, AraC_E_bind, Bacterial transcription activator, effector binding domain.
CD-Length = 157 residues, 100.0% aligned
Score =  124 bits (313), Expect = 1e-29
Identities = 56/159 (35%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Genomic Context:
Comment:
ReferenceID:5647
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22790
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35175
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2822_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2822

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4568 PA4878_tr translation of PA4878 270 99.99 99.99 0 1425.0
131209 gb|AAG08263.1|AE004901_5 (AE004901) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 270 99.99 99.99 0 1425.0
131210 gb|AAQ61896.1| (AE016925) probable transcription regulator, MerR family [Chromobacterium violaceum ATCC 12472] 270 45.92 58.51 6 561.0
GC ORFID: 45824How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4878Glimmer Score:
Start: 5008855Stop: 5009667
Length: 813
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4878 translation of PA4878Homolog Bit Score 553.0
Other Homologs: t_PA4878 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCACCATCGGCCAACTGGCGCGAATCTTCGAGATCTCCACCAAGACGCTTCGCCACTACGATGCCATC
GGCCTGTTCGTCCCCGCGCGCACCGGTAGCGACAACGGCTACCGCTACTACCAGCCGGAACAGATCGAGCAG
CTCTCGCGCATACTCGCGCTGCGCCGGCTGGACGTTCCGCTGGAAGCCATCGACCGCCTGAAACGCGATGGC
GCGCTGGACGACCCGCAACGCCTGCGGCATTTCCTGCAACGACACCAGCACACCCTGCGCGAAGAAATAAGC
GCCCGCCAGCGCCTGCTGGCGGAACTCGACCGAACCCTGGCGACGCTCGCCCACTGGAGGATCCGCAACATG
CATGCACGAATCGTCGAACGTCCCGCCTTCAGCGTGGTGGGCATGGAATACTTCGGCAGCGCCCCCGGCGAC
ACCATCGGCCAGCTCTGGGAGCGCTTCATCCCGCGCGAGCACGAGATCGCTGGCAAGCACGATCCCGAGGTC
TCCTATGGCATCTGCGCGCAGCAGCCCAACGGTGAATTCCACTACGTCGCCGGCTTCGAGGTGCAGGAAGGC
TGGCCGGTGCCGGAGGGCATGGTGCGCTTCCAGGTGCCGGCGCAGAAGTACGCGGTGTTCACCCACAAGGGC
ACGGCGCCGCAGATCGCCGAGAGCTTCCAGGCGATCTACAGCCACCTGCTCGCCGAACGCGGCCTGGAGCCC
AAGGCGGGGGTCGACTTCGAATACTACGACCAGCGTTTCCGCGGACCGCTGGATCCGAACTCGCAAGTCGAC
CTGTATATCCCCATCTACTGA