ViewGene
Locus Name:
GeneID:
Location:

GeneID:2821
TrivialName: PA14_09570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09570
PAO1 Ortholog Locus:PA4203
Sequence Length:855
Protein Length:284
Start: 823725
Stop: 822871
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07590.1|AE004837_1 (AE004837) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 281/283 (99%), Positives = 282/283 (99%)
Sequence:
ATGGACCTTTCCTCCCTCGAAATCTTCCGCGCGGTCGCCCACGAAGCCAGCGTCACCCGCGCCGCCCAGCAG
TTGCAGCGAGCGCAGTCGAACGTCACCACGCGGATCCGCCAGCTCGAGGAGGACCTGGGCGTCGAACTGTTC
CTGCGCGACGGCAAGCGCATGAGCCTGACCGAACGCGGCAGCGAATTCCTCGCCTATGCCGAGCAGTTGCTG
GCTCTCGCCGACGAGGCGCGCCAGTCGATGCATCCCGCCGAGCCCGGCGGGCGCCTGCGCCTGGGCAGCATG
GAAAGCACCGCGGCCAGCCGCCTGCCGGCGCTGCTGGCGAGCTATCACAAGGCCTGTCCGCGGGTCGCCCTG
GAAGTCTCCACCGGCACCAGTCGCGCGTTGTTCGATGGGGTGCGGGCGCGGCGCCTGGATTGCGCGCTGGTG
GCCGCCGGCCCGGGCTGGGCCGGCGAACTCGATGGCAGCGGCCTGCGCGGCGAGCCGCTGTTCCGCGAGGAA
CTGCTGATGATCCTGCCGGCCGAACACCCGCCGGTCCACGACGTCGCCGAGGTGCGCCTGCGCACCCTGGCC
GGCTTCGCCCGTGGCTGCACCTACCGGCAACTGGCCGAGGACAGCCTGGGCACGCCGCTGACGGTGCAGGAA
GTCGGCTCCTACCATGCGATCCTCGCCTGCGTCGCCGCCGGCGCCTGTGTCGGCGTGCTGCCGCGCTCGGTG
CTGCAACTGCTCGGCACACCGCCGCTGCGCAGCCTGCCCCTTGCCGAAGTAGACACCTGGCTGGTCTGGCGC
GAAGGCTACGCGACCGCCGCCTTCGAACGCTGGCGCGGCGTGCTGGGCCAGGCCGGCGGCTGA
Translation:
MDLSSLEIFRAVAHEASVTRAAQQLQRAQSNVTTRIRQLEEDLGVELFLRDGKRMSLTERGSEFLAYAEQLL
ALADEARQSMHPAEPGGRLRLGSMESTAASRLPALLASYHKACPRVALEVSTGTSRALFDGVRARRLDCALV
AAGPGWAGELDGSGLRGEPLFREELLMILPAEHPPVHDVAEVRLRTLAGFARGCTYRQLAEDSLGTPLTVQE
VGSYHAILACVAAGACVGVLPRSVLQLLGTPPLRSLPLAEVDTWLVWREGYATAAFERWRGVLGQAGG*
AnnotationID:2829GeneID:2821
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 05:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA4203
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31758.1| (BX640440) probable LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 291

 Score =  249 bits (637), Expect = 1e-65
 Identities = 147/277 (53%), Positives = 186/277 (67%), Gaps = 6/277 (2%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  94.9% aligned
Score =  125 bits (314), Expect = 6e-30
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 21/289 (7%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.5% aligned
Score = 99.3 bits (247), Expect = 5e-22
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 20/212 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22788




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36698




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2821_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2821
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4566
                           PA4203_tr
                           translation of PA4203
                           284
                           98.94
                           99.29
                           0
                           1425.0
     

     
     
131185
                           gb|AAG07590.1|AE004837_1
                           (AE004837) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           284
                           98.94
                           99.29
                           0
                           1425.0
     

     
     
131186
                           emb|CAE31758.1|
                           (BX640440) probable LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           302
                           50.33
                           63.90
                           29
                           636.0
     

     
     
131187
                           emb|CAE36345.1|
                           (BX640426) probable LysR-family transcriptional regulator [Bordetella parapertussis]
                           302
                           50.33
                           63.90
                           29
                           636.0
     

     
     
131188
                           emb|CAD14506.1|
                           (AL646061) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           311
                           48.23
                           56.27
                           36
                           636.0
     

     






      

          
GC ORFID: 45823How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4203Glimmer Score: 

          
Start: 4130212Stop: 4131066

          
Length: 855


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4203 translation of PA4203Homolog Bit Score 553.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7489 (ORF: BLASTX 211.0), t_PA1413 (ORF: BLASTX 205.0), t_PA4203 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCTTTCCTCCCTCGAAATCTTCCGCGCGGTCGCCCACGAAGCCAGCGTCACCCGCGCCGCCCAGCAG 
TTGCAGCGAGCGCAGTCGAACGTCACCACGCGGATCCGCCAGCTCGAGGAGGACCTGGGCGTCGAACTGTTC 
CTGCGCGACGGCAAGCGCATGAGCCTGACCGAACGCGGCAGCGAATTCCTCGCCTATGCCGAGCAGTTGCTG 
GCTCTCGCCGACGAGGCGCGCCAGTCGATGCATCCCGCCGAGCCCGGCGGGCGCCTGCGCCTGGGCAGCATG 
GAAAGCACCGCGGCCAGCCGCCTGCCGGCGCTGCTGGCGAGCTATCACAAGGCCTGTCCGCGGGTCGCCCTG 
GAAGTCTCCACCGGCACCAGTCGCGCGTTGTTCGATGGGGTGCGGGCGCGGCGCCTGGATTGCGCGCTGGTG 
GCCGCCGGCCCGGGCTGGGCCGGCGAACTCGATGGCAGCGGCCTGCGCGGCGAGCCGCTGTTCCGCGAGGAA 
CTGCTGATGATCCTGCCGGCCGAACACCCGCCGGTCCACGACGTCGCCGAGGTGCGCCTGCGCACCCTGGCC 
GGCTTCGCCCGTGGCTGCACCTACCGGCAACTGGCCGAGGACAGCCTGGGCACGCCGCTGACGGTGCAGGAA 
GTCGGCTCCTACCATGCGATCCTCGCCTGCGTCGCCGCCGGCGCCTGTGTCGGCGTGCTGCCGCGCTCGGTG 
CTGCAACTGCTCGGCACACCGCCGCTGCGCAGCCTGCCCCTTGCCGAAGTAGACACCTGGCTGGTCTGGCGC 
GAAGGCTACGCGACCGCCGCCTTCGAACGCTGGCGCGGCGTGCTGGGCCAGGCCGGCGGCTGA