ViewGene
Locus Name:
GeneID:
Location:

GeneID:2820
TrivialName: PA14_43550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43550
PAO1 Ortholog Locus:PA1621
Sequence Length:813
Protein Length:270
Start: 3878963
Stop: 3878151
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05010.1|AE004590_1 (AE004590) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 270/270 (100%), Positives = 270/270 (100%)
Sequence:
ATGTCGCAATCGGTTTTCTTCGCCCACGCCAACGGCTTCCCGTCGGCTACCTACGCCAAGCTGTTCGAGGCG
TTGGCGCCGGAGTACCGGGTGGATCACCTGGAAATGCACGGGCACGACCCGCGTTTCCCGGTGAACGACAAC
TGGGACAACCTGGTGGACGAACTGCTGCACCATCTCGCCAGCCTGGAACAGCCGGTCTGGGGCGTCGGCCAT
TCCCTCGGCGGCGTGCTGCACTACCACGCGGCGCTGCGCCGGCCGGAACTCTACCGCGGCGTGGTGATGCTC
GATTCGCCGGTGCTGACCCTCGCCGACCGCCTGGTGATCCGTGCCGCCAAGCGCTTCGGCTTCATCGACCGG
ATCACTCCGGCCGGGCGCACCCTGGGGCGTCGCGAGGCGTTCCCCGACCTGGAAGAGGCGCGGGCCTACTTC
TCCGGCAAGGCGCTGTTCCGCCGTTTCGACCCCGATTGCCTGGAGGCCTACGTACGCCACGGGCTGGCCGAC
AGCGGCGGCGGTTCCGGCCTGCGCCTGCGCTTCGATCCGGCCACCGAGATCAGCATCTACCGCAGCGTGCCG
CACAGCAGTCCGGGGCGTGCGCGGCAGTTGCAGGTGCCGCTGGCGATGGTGCGCGGGCGGCACAGCAAGGTG
GTGTTGCCGCACCACACCCGGCTGATCCGGGCGATGCCGCGCGGCGAGTTCATGTCGCTGCCCGGCGGCCAC
ATGTTCCCGCTGGAGCGCCCGCGGGAAACCGCCGAACTGCTGAAAGGCGTGTTCGATCGCTGGTCGCGGGCG
ACCGAGGAGCGTTCGGCATGA
Translation:
MSQSVFFAHANGFPSATYAKLFEALAPEYRVDHLEMHGHDPRFPVNDNWDNLVDELLHHLASLEQPVWGVGH
SLGGVLHYHAALRRPELYRGVVMLDSPVLTLADRLVIRAAKRFGFIDRITPAGRTLGRREAFPDLEEARAYF
SGKALFRRFDPDCLEAYVRHGLADSGGGSGLRLRFDPATEISIYRSVPHSSPGRARQLQVPLAMVRGRHSKV
VLPHHTRLIRAMPRGEFMSLPGGHMFPLERPRETAELLKGVFDRWSRATEERSA*
AnnotationID:2828GeneID:2820
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 10:10:57
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1621
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5643




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22786




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37292




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2820_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2820
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4565
                           PA1621_tr
                           translation of PA1621
                           270
                           99.99
                           99.99
                           0
                           1426.0
     

     
     
131181
                           gb|AAG05010.1|AE004590_1
                           (AE004590) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           270
                           99.99
                           99.99
                           0
                           1426.0
     

     
     
131182
                           gb|AAO55733.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           73.80
                           83.39
                           3
                           1063.0
     

     
     
131183
                           gb|AAN69746.1|AE016611_4
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           295
                           66.10
                           75.25
                           33
                           1061.0
     

     
     
131184
                           gb|AAQ60026.1|
                           (AE016918) probable hydrolase [Chromobacterium violaceum ATCC 12472]
                           276
                           42.02
                           56.88
                           15
                           535.0
     

     






      

          
GC ORFID: 45822How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1621Glimmer Score: 

          
Start: 1074946Stop: 1075758

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1621 translation of PA1621Homolog Bit Score 553.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1012 (ORF: BLASTX 405.0), t_PA1621 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCAATCGGTTTTCTTCGCCCACGCCAACGGCTTCCCGTCGGCTACCTACGCCAAGCTGTTCGAGGCG 
TTGGCGCCGGAGTACCGGGTGGATCACCTGGAAATGCACGGGCACGACCCGCGTTTCCCGGTGAACGACAAC 
TGGGACAACCTGGTGGACGAACTGCTGCACCATCTCGCCAGCCTGGAACAGCCGGTCTGGGGCGTCGGCCAT 
TCCCTCGGCGGCGTGCTGCACTACCACGCGGCGCTGCGCCGGCCGGAACTCTACCGCGGCGTGGTGATGCTC 
GATTCGCCGGTGCTGACCCTCGCCGACCGCCTGGTGATCCGTGCCGCCAAGCGCTTCGGCTTCATCGACCGG 
ATCACTCCGGCCGGGCGCACCCTGGGGCGTCGCGAGGCGTTCCCCGACCTGGAAGAGGCGCGGGCCTACTTC 
TCCGGCAAGGCGCTGTTCCGCCGTTTCGACCCCGATTGCCTGGAGGCCTACGTACGCCACGGGCTGGCCGAC 
AGCGGCGGCGGTTCCGGCCTGCGCCTGCGCTTCGATCCGGCCACCGAGATCAGCATCTACCGCAGCGTGCCG 
CACAGCAGTCCGGGGCGTGCGCGGCAGTTGCAGGTGCCGCTGGCGATGGTGCGCGGGCGGCACAGCAAGGTG 
GTGTTGCCGCACCACACCCGGCTGATCCGGGCGATGCCGCGCGGCGAGTTCATGTCGCTGCCCGGCGGCCAC 
ATGTTCCCGCTGGAGCGCCCGCGGGAAACCGCCGAACTGCTGAAAGGCGTGTTCGATCGCTGGTCGCGGGCG 
ACCGAGGAGCGTTCGGCATGA