ViewGene
Locus Name:
GeneID:
Location:

GeneID:282
TrivialName: PA14_18640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18640
PAO1 Ortholog Locus:PA3534
Sequence Length:2109
Protein Length:702
Start: 1603527
Stop: 1605635
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06922.1|AE004773_11 (AE004773) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 698/702 (99%), Positives = 698/702 (99%)
Sequence:
ATGAGCAAGACCCTCCACTACCGTGCGTGCCATCTCTGCGAGGCCATCTGCGGGCTCGCCATCGAGACCGAG
AGCGACGAGGGCGGCGTGCCGCGGATCCGCTCGATCAAGGGCGACCCGCAGGACAGCTTCAGCCGCGGCCAT
GTCTGTCCCAAGGCGGTGGCCCTGCAGGACATCCAGGACGACCCCGACCGCCTGCGCCAGCCGTTGCGCCGG
GTCGGCAGCGAGTGGCAGCCGATCGGCTGGGACGAGGCCTTCGCGCTGGTGGCCAGCCGCCTCGGCGAGATC
CGCGAGCGCCATGGCAACGATGCGGTGGCGGTCTACCAGGGCAATCCGAGCGTGCACAACTACGGCCTGATG
ACCCATAGCAACTACTTCCTCGGCCTGCTGAAAACGCGCAACCGCTTCTCCGCGACTTCCGTCGACCAGTTG
CCGCATCACCTGGTCAGCCAGCAGATGTACGGCCATGGTTTGTTGATCCCGATCCCCGACATCGACCACACC
GACTTCATGCTGGTGCTCGGCGGCAACCCGCTGGCGTCCAACGGCAGCATCATGACCGTGCCGGACGTGGAG
AAGCGCCTGAAGGCGCTGAAGGCCCGCGGCGGCCGGCTGGTGGTGGTCGATCCCCGGCGCAGCGAGACCGCG
GCTATCGCCGACCGGCACCTGTTCATTCGTCCCGGCCAGGATGCGGCGCTGTTGCTCGGGATACTCAACACC
CTGTTCGAGGAGAACCTCGGTCGCCCCACGCCGCTGCCGGTCGACGGGCTGGAGCGGGTGCGCGAGGCGGTC
GCGGTCTTCGACGCCGAGTCCATGAGCGTGCGCTGTGGCGTGCCGGCCGAAAGCATTCGCCAACTGGCGCGG
GATTTCGCCGCCGCCGAACGGGCGGTCTGCTATGGCCGGATGGGCGTTTCCACCCAGGCTTTCGGCACGCTC
TGCCAGTGGCTGGTGCAACTGATCAACCTGGTCACCGGCAACCTCGACCGGGTCGGTGGCGCGCTGTGCACC
TCGCCGGCCCTGGACCTGGTGGCGAGTACCTCGGGTGGCCACTTCGGCCGTTGGCGCAGCCGCGTCTCGGGG
CTGCCGGAATATGGCGGCGAACTGCCGGTGGCGGCATTGGCGGAAGAAATCCTCGGCGAAGGCGAGGGGCAG
GTGCGCGCGCTGGTCACGGTAGCCGGTAACCCGGTGCTGTCCACGCCCAACGGAAGGCGGCTCGAACAGGCC
CTGGACGGCCTGGAGTTCATGCTCAGCATCGACCTCTACATCAACGAGACGACCCGCTACGCCGATCTCATC
CTGCCGCCCACCGCGCCGCTGGAGCACGATCACTACGACACCACCTTCAACGTCTTCGCCGTGCGTAACGTG
ACCCGTTTCAACGAGGCCGTGCTGCCGCGTCCCGAGGGTGCGCTGCACGACTGGGAGATCTTCGTCGGCCTG
GCGCGGGCCTTCGCCGCGCGCAACGGCCTGGAGCTGAAACCGACCCTGGAGCCGCAGCAGATGATCGACCTC
GGCCTGCGCGCTGGCGCCTACGGCGACCGTTCCGAGCACAGGCTGAGCCTGGCCACTCTGCGCGAACATCCC
CACGGCATCGACCTCGGGCCGCTGCGGCCGAACCTGGCGCCGCGCCTGAAGACCGTCGGCCAGCGCATCCAG
GCCGCGCCGCCGCTGTTCGTCGACGACCTGCAACGCTTCGCCGCACAGCCACTGCCTGCGTCCGACCAGTTG
CTGCTGATCGGACGACGCCACGTGCGCAGCAACAATTCCTGGATGCACAACTACCATCGCCTGGTGAAGGGC
AAGCCGCGTCACCAGTTGCTGATGCACCCGCGCGACCTGGAGGGTCGCGGCCTGGTCGACGGGCAGCGGGTG
CGGGTGCGCTCGCGGGTCGGCAGCGTCGAGGTGGAGGTGGCGGCGAGCAGCGAGATGATGCCCGGGGTGGTC
AGCCTGCCGCACGGCTGGGGCCACGCGCGGCCCGGCGTGCAACTGGCGATCGCCCGCGCCCAGGCCGGCGCC
AGCGCCAACGACCTGACCGACGAGCGTCATCTCGACCTGCTGTCGGGCAACGCCGCGCTCAACGGCCTGCCG
GTGGAGGTGGAAGCGGCCTGA
Translation:
MSKTLHYRACHLCEAICGLAIETESDEGGVPRIRSIKGDPQDSFSRGHVCPKAVALQDIQDDPDRLRQPLRR
VGSEWQPIGWDEAFALVASRLGEIRERHGNDAVAVYQGNPSVHNYGLMTHSNYFLGLLKTRNRFSATSVDQL
PHHLVSQQMYGHGLLIPIPDIDHTDFMLVLGGNPLASNGSIMTVPDVEKRLKALKARGGRLVVVDPRRSETA
AIADRHLFIRPGQDAALLLGILNTLFEENLGRPTPLPVDGLERVREAVAVFDAESMSVRCGVPAESIRQLAR
DFAAAERAVCYGRMGVSTQAFGTLCQWLVQLINLVTGNLDRVGGALCTSPALDLVASTSGGHFGRWRSRVSG
LPEYGGELPVAALAEEILGEGEGQVRALVTVAGNPVLSTPNGRRLEQALDGLEFMLSIDLYINETTRYADLI
LPPTAPLEHDHYDTTFNVFAVRNVTRFNEAVLPRPEGALHDWEIFVGLARAFAARNGLELKPTLEPQQMIDL
GLRAGAYGDRSEHRLSLATLREHPHGIDLGPLRPNLAPRLKTVGQRIQAAPPLFVDDLQRFAAQPLPASDQL
LLIGRRHVRSNNSWMHNYHRLVKGKPRHQLLMHPRDLEGRGLVDGQRVRVRSRVGSVEVEVAASSEMMPGVV
SLPHGWGHARPGVQLAIARAQAGASANDLTDERHLDLLSGNAALNGLPVEVEAA*
AnnotationID:292GeneID:282
AnnotatorUID: diggins
Modification Date/Time: 2005-07-17 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, molybdopterin-binding
Cell Localization:()
Synonyms:PA3534
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00384,COG0243
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66705.1|AE016299_1 (AE016778) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 702

 Score = 1089 bits (2817), Expect = 0.0
 Identities = 539/702 (76%), Positives = 600/702 (85%)

>gb|AAO57618.1| (AE016871) oxidoreductase, molybdopterin-binding [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 732

 Score = 1087 bits (2811), Expect = 0.0
 Identities = 537/703 (76%), Positives = 599/703 (85%), Gaps = 4/703 (0%)







 
Structural Features:
pfam00384, Molybdopterin, Molybdopterin oxidoreductase.
CD-Length = 359 residues, 100.0% aligned
Score =  125 bits (315), Expect = 2e-29
Identities = 98/427 (22%), Positives = 157/427 (36%), Gaps = 76/427 (17%)

COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing 
[Energy production and conversion]
CD-Length = 765 residues,  95.3% aligned
Score =  360 bits (926), Expect = 2e-100
Identities = 198/754 (26%), Positives = 298/754 (39%), Gaps = 77/754 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:567




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17709




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32029




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:282_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:282
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
467
                           PA3534_tr
                           translation of PA3534
                           702
                           99.43
                           99.43
                           0
                           3626.0
     

     
     
24420
                           gb|AAG06922.1|AE004773_11
                           (AE004773) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           702
                           99.43
                           99.43
                           0
                           3626.0
     

     
     
24421
                           gb|AAN66705.1|AE016299_1
                           (AE016778) oxidoreductase, putative [Pseudomonas putida KT2440]
                           702
                           76.78
                           85.47
                           0
                           2817.0
     

     
     
24422
                           gb|AAO57618.1|
                           (AE016871) oxidoreductase, molybdopterin-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           732
                           73.36
                           81.96
                           30
                           2814.0
     

     
     
24423
                           dbj|BAC74301.1|
                           (AP005047) putative dehydrogenase [Streptomyces avermitilis MA-4680]
                           753
                           45.15
                           57.37
                           61
                           1536.0
     

     






      

          
GC ORFID: 43284How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3534Glimmer Score: 

          
Start: 3350407Stop: 3348299

          
Length: 2109


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3534 translation of PA3534Homolog Bit Score 1401.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6263 (ORF: BLASTX 1113.0), t_PA3534 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGACCCTCCACTACCGTGCGTGCCATCTCTGCGAGGCCATCTGCGGGCTCGCCATCGAGACCGAG 
AGCGACGAGGGCGGCGTGCCGCGGATCCGCTCGATCAAGGGCGACCCGCAGGACAGCTTCAGCCGCGGCCAT 
GTCTGTCCCAAGGCGGTGGCCCTGCAGGACATCCAGGACGACCCCGACCGCCTGCGCCAGCCGTTGCGCCGG 
GTCGGCAGCGAGTGGCAGCCGATCGGCTGGGACGAGGCCTTCGCGCTGGTGGCCAGCCGCCTCGGCGAGATC 
CGCGAGCGCCATGGCAACGATGCGGTGGCGGTCTACCAGGGCAATCCGAGCGTGCACAACTACGGCCTGATG 
ACCCATAGCAACTACTTCCTCGGCCTGCTGAAAACGCGCAACCGCTTCTCCGCGACTTCCGTCGACCAGTTG 
CCGCATCACCTGGTCAGCCAGCAGATGTACGGCCATGGTTTGTTGATCCCGATCCCCGACATCGACCACACC 
GACTTCATGCTGGTGCTCGGCGGCAACCCGCTGGCGTCCAACGGCAGCATCATGACCGTGCCGGACGTGGAG 
AAGCGCCTGAAGGCGCTGAAGGCCCGCGGCGGCCGGCTGGTGGTGGTCGATCCCCGGCGCAGCGAGACCGCG 
GCTATCGCCGACCGGCACCTGTTCATTCGTCCCGGCCAGGATGCGGCGCTGTTGCTCGGGATACTCAACACC 
CTGTTCGAGGAGAACCTCGGTCGCCCCACGCCGCTGCCGGTCGACGGGCTGGAGCGGGTGCGCGAGGCGGTC 
GCGGTCTTCGACGCCGAGTCCATGAGCGTGCGCTGTGGCGTGCCGGCCGAAAGCATTCGCCAACTGGCGCGG 
GATTTCGCCGCCGCCGAACGGGCGGTCTGCTATGGCCGGATGGGCGTTTCCACCCAGGCTTTCGGCACGCTC 
TGCCAGTGGCTGGTGCAACTGATCAACCTGGTCACCGGCAACCTCGACCGGGTCGGTGGCGCGCTGTGCACC 
TCGCCGGCCCTGGACCTGGTGGCGAGTACCTCGGGTGGCCACTTCGGCCGTTGGCGCAGCCGCGTCTCGGGG 
CTGCCGGAATATGGCGGCGAACTGCCGGTGGCGGCATTGGCGGAAGAAATCCTCGGCGAAGGCGAGGGGCAG 
GTGCGCGCGCTGGTCACGGTAGCCGGTAACCCGGTGCTGTCCACGCCCAACGGAAGGCGGCTCGAACAGGCC 
CTGGACGGCCTGGAGTTCATGCTCAGCATCGACCTCTACATCAACGAGACGACCCGCTACGCCGATCTCATC 
CTGCCGCCCACCGCGCCGCTGGAGCACGATCACTACGACACCACCTTCAACGTCTTCGCCGTGCGTAACGTG 
ACCCGTTTCAACGAGGCCGTGCTGCCGCGTCCCGAGGGTGCGCTGCACGACTGGGAGATCTTCGTCGGCCTG 
GCGCGGGCCTTCGCCGCGCGCAACGGCCTGGAGCTGAAACCGACCCTGGAGCCGCAGCAGATGATCGACCTC 
GGCCTGCGCGCTGGCGCCTACGGCGACCGTTCCGAGCACAGGCTGAGCCTGGCCACTCTGCGCGAACATCCC 
CACGGCATCGACCTCGGGCCGCTGCGGCCGAACCTGGCGCCGCGCCTGAAGACCGTCGGCCAGCGCATCCAG 
GCCGCGCCGCCGCTGTTCGTCGACGACCTGCAACGCTTCGCCGCACAGCCACTGCCTGCGTCCGACCAGTTG 
CTGCTGATCGGACGACGCCACGTGCGCAGCAACAATTCCTGGATGCACAACTACCATCGCCTGGTGAAGGGC 
AAGCCGCGTCACCAGTTGCTGATGCACCCGCGCGACCTGGAGGGTCGCGGCCTGGTCGACGGGCAGCGGGTG 
CGGGTGCGCTCGCGGGTCGGCAGCGTCGAGGTGGAGGTGGCGGCGAGCAGCGAGATGATGCCCGGGGTGGTC 
AGCCTGCCGCACGGCTGGGGCCACGCGCGGCCCGGCGTGCAACTGGCGATCGCCCGCGCCCAGGCCGGCGCC 
AGCGCCAACGACCTGACCGACGAGCGTCATCTCGACCTGCTGTCGGGCAACGCCGCGCTCAACGGCCTGCCG 
GTGGAGGTGGAAGCGGCCTGA