ViewGene
Locus Name:
GeneID:
Location:

GeneID:2819
TrivialName: PA14_68370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68370
PAO1 Ortholog Locus:PA5175
Sequence Length:822
Protein Length:273
Start: 6101120
Stop: 6100299
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08560.1|AE004930_6 (AE004930) CysQ protein [Pseudomonas aeruginosa PAO1]
Identities = 272/273 (99%), Positives = 272/273 (99%)
Sequence:
ATGAGGCCGGTGCCTTGGGGCGAATTGGTGGCGCTGGTGCGGCGCGCCGGCGAGGCGATCCTGCCGCACTGG
CGCGCCGACGTGGCGGTGCGCTCGAAGGCCGACGAATCGCCGGTGACTGCCGCCGACCTGGCCGCGCACCAT
ATATTGGAGGCGGGATTGCGGGCGCTGGCGCCGGACATTCCGGTGCTTTCCGAAGAGGATTGCGAGATACCG
CTGAGCGAGCGCGGCCACTGGCGGCGCTGGTGGCTGGTGGACCCGCTGGACGGCACCAAGGAGTTCATCTCC
GGTAGCGAGGAGTTCACCGTCAACGTGGCCCTGGTCGAGGATGGCCGGGTGCTGTTCGGCCTGGTCGGCGTG
CCGGTGAGCGGCCGCTGCTACTACGGTGGCGCCGGTCTCGGTGCCTGGCGCGAGGAGGCCGATGGCCGCGCG
CAACCGATCAGTGTGCGCCTGGAGCCCGAGGAGGCCTTCACCGTGGTGGCCAGCAAGCGCCACGGCAGCCCG
GCCCAGGAGCGCCTGCTGGATGGCTTGAGCGAGCGCTTCGGCGACCTGCGGCGAGCCAGTATCGGCAGTTCG
CTGAAGTTCTGCCTGCTGGCCGAGGGCGCTGCCGACTGCTATCCGCGCCTGACGCCAACCTCGCAATGGGAC
ACGGCCGCCGCCCAGGGTGTGCTGGAGGGCGCCGGCGGCGAGGTGCTCGACCTGCATGGCGCGCCATTCACC
TACGAGCCGCGCGAGGACTACCTCAACGGCTCCTTCCTGGCCCTGCCGCGCGCTGCCGAGTGGCGCAGCGAA
CTGATCCAACTGGCGCGCGCGCTGCACTGA
Translation:
MRPVPWGELVALVRRAGEAILPHWRADVAVRSKADESPVTAADLAAHHILEAGLRALAPDIPVLSEEDCEIP
LSERGHWRRWWLVDPLDGTKEFISGSEEFTVNVALVEDGRVLFGLVGVPVSGRCYYGGAGLGAWREEADGRA
QPISVRLEPEEAFTVVASKRHGSPAQERLLDGLSERFGDLRRASIGSSLKFCLLAEGAADCYPRLTPTSQWD
TAAAQGVLEGAGGEVLDLHGAPFTYEPREDYLNGSFLALPRAAEWRSELIQLARALH*
AnnotationID:2827GeneID:2819
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:37
Gene Name:cysQ
Confidence Code:2
GeneProduct:3'(2'),5'-bisphosphate nucleotidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1218.pfam00459,COG0483
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65892.1|AE016217_4 (AE016775) 3'(2'),5'-bisphosphate nucleotidase [Pseudomonas putida
           KT2440]
          Length = 266

 Score =  364 bits (935), Expect = e-100
 Identities = 181/263 (68%), Positives = 206/263 (78%), Gaps = 2/263 (0%)

>gb|AAO58823.1| (AE016875) 3'(2'),5'-bisphosphate nucleotidase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 269

 Score =  357 bits (917), Expect = 3e-98
 Identities = 178/265 (67%), Positives = 206/265 (77%), Gaps = 2/265 (0%)








 
Structural Features:
COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 
[Inorganic ion transport and metabolism]
CD-Length = 276 residues,  98.6% aligned
Score =  283 bits (725), Expect = 2e-77
Identities = 135/276 (48%), Positives = 169/276 (61%), Gaps = 12/276 (4%)

pfam00459, Inositol_P, Inositol monophosphatase family.
CD-Length = 267 residues,  97.0% aligned
Score =  175 bits (446), Expect = 3e-45
Identities = 78/263 (29%), Positives = 114/263 (43%), Gaps = 8/263 (3%)

COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes 
of inositol monophosphatase family 
[Carbohydrate transport and metabolism]
CD-Length = 260 residues,  95.4% aligned
Score =  142 bits (360), Expect = 3e-35
Identities = 81/257 (31%), Positives = 112/257 (43%), Gaps = 15/257 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5641




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22784




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34889




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2819_cdd.html


    		




 
URL:

















    ReferenceID:35770




  
Author/Investigator(s):
        Peng Z, Verma DP.





  
Title:
        A rice HAL2-like gene encodes a Ca(2+)-sensitive 3'(2'),5'-diphosphonucleoside 3'(2')-phosphohydrolase and complements yeast met22 and Escherichia coli cysQ mutations.




  
PubMed:
        7493934


MedLine:
        




    
Source:
J Biol Chem. 1995 Dec 8;270(49):29105-10.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7493934









           
Homologs By Global Alignment 

           

       



     
Gene ID:2819
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4564
                           PA5175_tr
                           translation of PA5175
                           273
                           99.63
                           99.63
                           0
                           1428.0
     

     
     
131135
                           gb|AAG08560.1|AE004930_6
                           (AE004930) CysQ protein [Pseudomonas aeruginosa PAO1]
                           273
                           99.63
                           99.63
                           0
                           1428.0
     

     
     
131136
                           gb|AAN65892.1|AE016217_4
                           (AE016775) 3'(2'),5'-bisphosphate nucleotidase [Pseudomonas putida KT2440]
                           275
                           65.81
                           74.90
                           11
                           933.0
     

     
     
131137
                           gb|AAO58823.1|
                           (AE016875) 3'(2'),5'-bisphosphate nucleotidase [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           65.21
                           75.36
                           10
                           918.0
     

     
     
131143
                           emb|CAC92758.1|
                           (AJ414157) inositol monophosphatase family protein [Yersinia pestis CO92]
                           278
                           44.24
                           57.19
                           36
                           521.0
     

     






      

          
GC ORFID: 45821How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5175Glimmer Score: 

          
Start: 5364806Stop: 5363985

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5175 translation of PA5175Homolog Bit Score 554.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2434 (ORF: BLASTX 365.0), t_PA5175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGCCGGTGCCTTGGGGCGAATTGGTGGCGCTGGTGCGGCGCGCCGGCGAGGCGATCCTGCCGCACTGG 
CGCGCCGACGTGGCGGTGCGCTCGAAGGCCGACGAATCGCCGGTGACTGCCGCCGACCTGGCCGCGCACCAT 
ATATTGGAGGCGGGATTGCGGGCGCTGGCGCCGGACATTCCGGTGCTTTCCGAAGAGGATTGCGAGATACCG 
CTGAGCGAGCGCGGCCACTGGCGGCGCTGGTGGCTGGTGGACCCGCTGGACGGCACCAAGGAGTTCATCTCC 
GGTAGCGAGGAGTTCACCGTCAACGTGGCCCTGGTCGAGGATGGCCGGGTGCTGTTCGGCCTGGTCGGCGTG 
CCGGTGAGCGGCCGCTGCTACTACGGTGGCGCCGGTCTCGGTGCCTGGCGCGAGGAGGCCGATGGCCGCGCG 
CAACCGATCAGTGTGCGCCTGGAGCCCGAGGAGGCCTTCACCGTGGTGGCCAGCAAGCGCCACGGCAGCCCG 
GCCCAGGAGCGCCTGCTGGATGGCTTGAGCGAGCGCTTCGGCGACCTGCGGCGAGCCAGTATCGGCAGTTCG 
CTGAAGTTCTGCCTGCTGGCCGAGGGCGCTGCCGACTGCTATCCGCGCCTGACGCCAACCTCGCAATGGGAC 
ACGGCCGCCGCCCAGGGTGTGCTGGAGGGCGCCGGCGGCGAGGTGCTCGACCTGCATGGCGCGCCATTCACC 
TACGAGCCGCGCGAGGACTACCTCAACGGCTCCTTCCTGGCCCTGCCGCGCGCTGCCGAGTGGCGCAGCGAA 
CTGATCCAACTGGCGCGCGCGCTGCACTGA