ViewGene
Locus Name:
GeneID:
Location:

GeneID:2818
TrivialName: PA14_64300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64300
PAO1 Ortholog Locus:PA4861
Sequence Length:858
Protein Length:285
Start: 5731190
Stop: 5732047
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08246.1|AE004899_7 (AE004899) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 284/285 (99%), Positives = 285/285 (100%)
Sequence:
ATGAGGACCACCCCGCACCTGATGCTCGAACCGGCCTTCCACCCCGGCCTCGATAGCGCCGGCAGCGGCCGC
GACGCCATCGGCCTGGGCGCCGCCACCAGCGGCCGGCTGGACGCGCGCCACGGCACCATCCTCAGCCTGGAA
GACATCAACGTCAGCTTCGACGGCTTCAAGGCCCTGCGCGACCTGACCCTGTACATCGGCGTCGGCGAATTG
CGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACCCTGATGGACGTGATCACCGGCAAGACCCGCCCG
CAGAGCGGTACCGCGTATTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAGGTGCAGATCGCCCAGGCC
GGGATCGGTCGCAAGTTCCAGAAGCCTACGGTGTTCGAGGCCCTGAGCGTGTTCGAGAACCTCGAACTGGCG
CAGAGGGCCGACAAGTCGGTGTGGGCCAGCCTGCGCGCGCGGCTCGACGGCACGCAGAGGGAACGCATCGAG
GAGGTGCTCGCCACCATCCGCCTGCTGGAGTCGCGGCAGCGTCCGGCGGGTTTGCTGTCCCACGGCCAGAAG
CAGTTCCTCGAGATCGGCATGCTGCTGGTGCAGGAACCGCAGTTGCTGCTGCTCGACGAGCCGGTGGCGGGC
ATGACCGATGCCGAGACCGAATTCACCGCCGAGCTGTTCAAGTCCCTGGCGCGCAAGCACTCGCTGATGGTG
GTGGAGCACGACATGGGTTTCGTCGGCAGCATCGCCGACCATGTCACCGTGCTGCACCAGGGCCACGTGCTG
GCCGAAGGCTCGCTGGCGGAGGTACAGGCCGACGAACAGGTGATCGAGGTCTACCTCGGTCGCTGA
Translation:
MRTTPHLMLEPAFHPGLDSAGSGRDAIGLGAATSGRLDARHGTILSLEDINVSFDGFKALRDLTLYIGVGEL
RCIIGPNGAGKTTLMDVITGKTRPQSGTAYFGDTLDLTRMSEVQIAQAGIGRKFQKPTVFEALSVFENLELA
QRADKSVWASLRARLDGTQRERIEEVLATIRLLESRQRPAGLLSHGQKQFLEIGMLLVQEPQLLLLDEPVAG
MTDAETEFTAELFKSLARKHSLMVVEHDMGFVGSIADHVTVLHQGHVLAEGSLAEVQADEQVIEVYLGR*
AnnotationID:2826GeneID:2818
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 09:09:16
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA4861
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4674,COG0411,COG0410
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70413.1|AE016683_4 (AE016792) branched-chain amino acid ABC transporter, ATP-binding
           protein, putative [Pseudomonas putida KT2440]
          Length = 285

 Score =  454 bits (1168), Expect = e-127
 Identities = 234/281 (83%), Positives = 248/281 (88%), Gaps = 4/281 (1%)

>gb|AAO58317.1| (AE016873) branched-chain amino acid ABC transporter, ATP-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 286

 Score =  452 bits (1162), Expect = e-126
 Identities = 234/282 (82%), Positives = 250/282 (88%), Gaps = 1/282 (0%)

>gb|AAM86550.1|AE013901_11 (AE013901) hypothetical ABC transporter ATP-binding protein
           [Yersinia pestis KIM]
          Length = 278

 Score =  363 bits (931), Expect = e-100
 Identities = 185/242 (76%), Positives = 211/242 (87%)








 
Structural Features:
COG4674, Uncharacterized_ABC-type_transport_system, Uncharacterized ABC-type 
transport system, ATPase component
CD-Length = 249 residues,  97.6% aligned
Score =  395 bits (1017), Expect = 2e-111
Identities = 173/243 (71%), Positives = 196/243 (80%)

COG0411, LivG, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism] 
CD-Length = 250 residues,  99.2% aligned
Score =  224 bits (573), Expect = 8e-60
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 7/249 (2%)

COG0410, LivF, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 237 residues,  99.2% aligned
Score =  164 bits (417), Expect = 1e-41
Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 13/245 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5639




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22782




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35196




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2818_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2818
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4563
                           PA4861_tr
                           translation of PA4861
                           285
                           99.64
                           99.99
                           0
                           1428.0
     

     
     
131101
                           gb|AAG08246.1|AE004899_7
                           (AE004899) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           285
                           99.64
                           99.99
                           0
                           1428.0
     

     
     
131103
                           gb|AAO58317.1|
                           (AE016873) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           287
                           82.22
                           88.15
                           3
                           1165.0
     

     
     
131102
                           gb|AAN70413.1|AE016683_4
                           (AE016792) branched-chain amino acid ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           289
                           81.66
                           86.50
                           8
                           1168.0
     

     
     
131104
                           gb|AAM86550.1|AE013901_11
                           (AE013901) hypothetical ABC transporter ATP-binding protein [Yersinia pestis KIM]
                           295
                           65.08
                           74.57
                           27
                           917.0
     

     






      

          
GC ORFID: 45820How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4861Glimmer Score: 

          
Start: 4994870Stop: 4995727

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4861 translation of PA4861Homolog Bit Score 554.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5800 (ORF: BLASTX 451.0), psyr_15may02_Scaffold1_revised_gene284 (ORF: BLASTX 247.0), t_PA4861 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGACCACCCCGCACCTGATGCTCGAACCGGCCTTCCACCCCGGCCTCGATAGCGCCGGCAGCGGCCGC 
GACGCCATCGGCCTGGGCGCCGCCACCAGCGGCCGGCTGGACGCGCGCCACGGCACCATCCTCAGCCTGGAA 
GACATCAACGTCAGCTTCGACGGCTTCAAGGCCCTGCGCGACCTGACCCTGTACATCGGCGTCGGCGAATTG 
CGCTGCATCATCGGCCCCAACGGCGCCGGCAAGACCACCCTGATGGACGTGATCACCGGCAAGACCCGCCCG 
CAGAGCGGTACCGCGTATTTCGGCGACACCCTCGACCTGACCCGCATGAGCGAGGTGCAGATCGCCCAGGCC 
GGGATCGGTCGCAAGTTCCAGAAGCCTACGGTGTTCGAGGCCCTGAGCGTGTTCGAGAACCTCGAACTGGCG 
CAGAGGGCCGACAAGTCGGTGTGGGCCAGCCTGCGCGCGCGGCTCGACGGCACGCAGAGGGAACGCATCGAG 
GAGGTGCTCGCCACCATCCGCCTGCTGGAGTCGCGGCAGCGTCCGGCGGGTTTGCTGTCCCACGGCCAGAAG 
CAGTTCCTCGAGATCGGCATGCTGCTGGTGCAGGAACCGCAGTTGCTGCTGCTCGACGAGCCGGTGGCGGGC 
ATGACCGATGCCGAGACCGAATTCACCGCCGAGCTGTTCAAGTCCCTGGCGCGCAAGCACTCGCTGATGGTG 
GTGGAGCACGACATGGGTTTCGTCGGCAGCATCGCCGACCATGTCACCGTGCTGCACCAGGGCCACGTGCTG 
GCCGAAGGCTCGCTGGCGGAGGTACAGGCCGACGAACAGGTGATCGAGGTCTACCTCGGTCGCTGA