ViewGene

Locus Name:
GeneID:
Location:

GeneID:2817
TrivialName: PA14_21460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21460
PAO1 Ortholog Locus:PA3293
Sequence Length:816
Protein Length:271
Start: 1860650
Stop: 1861465
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06681.1|AE004751_7 (AE004751) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 265/271 (97%), Positives = 266/271 (98%)
Sequence:
ATGACGCCGAACCCCCGCCATTGGGCCAGCGAGCTGTGGCAGCGCTCCCGCGATCGCGGCTTGCAGACCCAC
ATCGATGTGCTGGTCGACGCTACCGGGCTGGACGACTATCCCTTGCTTACCGAGCATGCGCGGCAAAGCGAT
CCTCCGGCGCTGTTCAAATTGCTGGAGCAAACCCCGGAGGCCGCCCTGGCCGACGAGGGCCCACTGCTGCTG
CGCCTGGAAGACGGCCACGCGGGCTGGCTGGACGAACTGCTCGAACGCATCGACTGCCGCCGCCACCTGATG
CTCCTGTTCAGCCCCTGGCCGTTGCCGCGCCTGGGCGAGCACCTGCGCAGCTGCACCCAGGCCGAGTGGAAC
CAGGGCCGTTCCAGCGGCGTGCTGCGTTTCTACGATCCGGGCCTGTTCATGGCCGTCAGCGACATGCTCGAC
CCCCGGCAGAGCCGTTACCTGCATGCCCCGGTTTCCAGCTGGCACTGGCTGGACCGCGACGGCCGGCCGAGG
GCGCTGGCCGGTCATTACCAGGCCCACGAGACGCCGCCGCTGCAAGCGGCCCTCCGCCTGGAAGCGCATCAA
GTCGCCGCCTTGCGCGCCTGGAGCGAGGCCGAAGCCTACCGCCGCGAATACTTCGTGCTGCCCCGCGAGCAT
GGCCTGGGCGGCCAGGAAAGCCTGCTCCAGCATCTGGTCCAGGCGCACCTGGCCGCCGACCGCCAGGGCTTG
CAGGACTTCGACCAGCGCGATGCCTTCGTCGCCCAGTGGCTGCGCGAACAGACCCCCGGCCCCGGCTTTTCC
CCGGCGGGAACGAGTCGCGCATGA
Translation:
MTPNPRHWASELWQRSRDRGLQTHIDVLVDATGLDDYPLLTEHARQSDPPALFKLLEQTPEAALADEGPLLL
RLEDGHAGWLDELLERIDCRRHLMLLFSPWPLPRLGEHLRSCTQAEWNQGRSSGVLRFYDPGLFMAVSDMLD
PRQSRYLHAPVSSWHWLDRDGRPRALAGHYQAHETPPLQAALRLEAHQVAALRAWSEAEAYRREYFVLPREH
GLGGQESLLQHLVQAHLAADRQGLQDFDQRDAFVAQWLREQTPGPGFSPAGTSRA*
AnnotationID:2825GeneID:2817
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3293
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:5637
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22780
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2817

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4562 PA3293_tr translation of PA3293 271 97.78 98.15 0 1428.0
131100 gb|AAG06681.1|AE004751_7 (AE004751) hypothetical protein PA3293 [Pseudomonas aeruginosa PAO1] 271 97.78 98.15 0 1428.0
GC ORFID: 45819How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3293Glimmer Score:
Start: 3093281Stop: 3092466
Length: 816
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3293 translation of PA3293Homolog Bit Score 554.0
Other Homologs: t_PA3293 (ORF: GLIMMER)
GC ORF Sequence
ATGACGCCGAACCCCCGCCATTGGGCCAGCGAGCTGTGGCAGCGCTCCCGCGATCGCGGCTTGCAGACCCAC
ATCGATGTGCTGGTCGACGCTACCGGGCTGGACGACTATCCCTTGCTTACCGAGCATGCGCGGCAAAGCGAT
CCTCCGGCGCTGTTCAAATTGCTGGAGCAAACCCCGGAGGCCGCCCTGGCCGACGAGGGCCCACTGCTGCTG
CGCCTGGAAGACGGCCACGCGGGCTGGCTGGACGAACTGCTCGAACGCATCGACTGCCGCCGCCACCTGATG
CTCCTGTTCAGCCCCTGGCCGTTGCCGCGCCTGGGCGAGCACCTGCGCAGCTGCACCCAGGCCGAGTGGAAC
CAGGGCCGTTCCAGCGGCGTGCTGCGTTTCTACGATCCGGGCCTGTTCATGGCCGTCAGCGACATGCTCGAC
CCCCGGCAGAGCCGTTACCTGCATGCCCCGGTTTCCAGCTGGCACTGGCTGGACCGCGACGGCCGGCCGAGG
GCGCTGGCCGGTCATTACCAGGCCCACGAGACGCCGCCGCTGCAAGCGGCCCTCCGCCTGGAAGCGCATCAA
GTCGCCGCCTTGCGCGCCTGGAGCGAGGCCGAAGCCTACCGCCGCGAATACTTCGTGCTGCCCCGCGAGCAT
GGCCTGGGCGGCCAGGAAAGCCTGCTCCAGCATCTGGTCCAGGCGCACCTGGCCGCCGACCGCCAGGGCTTG
CAGGACTTCGACCAGCGCGATGCCTTCGTCGCCCAGTGGCTGCGCGAACAGACCCCCGGCCCCGGCTTTTCC
CCGGCGGGAACGAGTCGCGCATGA