ViewGene
Locus Name:
GeneID:
Location:

GeneID:2816
TrivialName: PA14_29130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29130
PAO1 Ortholog Locus:PA2707
Sequence Length:846
Protein Length:281
Start: 2520399
Stop: 2521244
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06095.1|AE004698_11 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/281 (100%), Positives = 281/281 (100%)
Sequence:
ATGAAGTTCGAAGGCACCCAGTCCTACGTCGCCACCGACGACCTCAAGCTCGCGGTCAACGCCGCCATCACC
CTGCAGCGGCCGCTGCTGGTGAAGGGCGAACCGGGCACCGGCAAGACCATGCTCGCCGAGCAGCTGGCCGAG
TCCTTCGGCGCCAAGCTGATCACCTGGCACATCAAGTCCACCACCAAGGCCCACCAGGGCCTCTACGAGTAC
GATGCGGTAAGCCGCCTGCGCGATTCGCAGCTGGGCGTGGACAAGGTCCACGACGTGCGCAACTACATCAAG
AAGGGCAAGCTCTGGGAGGCCTTCGAGGCCGAGGAGCGGGTGATCCTGCTGATCGACGAGATCGACAAGGCC
GACATCGAGTTCCCCAACGACCTGTTGCAGGAACTCGACAAGATGGAGTTCTACGTCTACGAGACCAACGAA
ACCATCAAGGCGAAGCAGCGCCCGATCATCATCATCACCTCGAACAACGAGAAGGAACTGCCCGACGCCTTC
CTGCGCCGCTGTTTCTTCCACTACATCGCCTTCCCCGACCGCGAGACGTTGCAGAAGATCGTCGATGTGCAC
TACCCGAACATCAAGCAGTCGCTGGTCAGCGAGGCGCTGGACATCTTCTTCGACGTGCGCAAGGTGCCCGGC
CTGAAAAAGAAACCTTCGACTTCCGAGTTGGTCGACTGGCTGAAGCTGCTGATGGCCGACGAGATCGGCGAA
GCGGTGCTGCGCGAACGCGATCCGACCAAGGCGATCCCGCCGCTGGCCGGCGCCCTGGTGAAGAACGAGCAG
GACGTGCAGCTTCTCGAGCGCCTGGCGTTCATGAGCCGCCGCGCCAGCCGCTGA
Translation:
MKFEGTQSYVATDDLKLAVNAAITLQRPLLVKGEPGTGKTMLAEQLAESFGAKLITWHIKSTTKAHQGLYEY
DAVSRLRDSQLGVDKVHDVRNYIKKGKLWEAFEAEERVILLIDEIDKADIEFPNDLLQELDKMEFYVYETNE
TIKAKQRPIIIITSNNEKELPDAFLRRCFFHYIAFPDRETLQKIVDVHYPNIKQSLVSEALDIFFDVRKVPG
LKKKPSTSELVDWLKLLMADEIGEAVLRERDPTKAIPPLAGALVKNEQDVQLLERLAFMSRRASR*
AnnotationID:2824GeneID:2816
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 20:08:51
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase, AAA family
Cell Localization:()
Synonyms:PA2707
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70146.1|AE016654_3 (AE016791) ATPase, AAA family [Pseudomonas putida KT2440]
          Length = 281

 Score =  530 bits (1364), Expect = e-150
 Identities = 265/281 (94%), Positives = 274/281 (97%)

>gb|AAO57371.1| (AE016870) ATPase, AAA family [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 281

 Score =  526 bits (1354), Expect = e-149
 Identities = 261/281 (92%), Positives = 274/281 (97%)

>emb|CAE35901.1| (BX640448) putative ATP-binding protein [Bordetella bronchiseptica]
          Length = 295

 Score =  409 bits (1051), Expect = e-113
 Identities = 200/280 (71%), Positives = 239/280 (85%), Gaps = 1/280 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22778




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36324




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2816_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2816
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4561
                           PA2707_tr
                           translation of PA2707
                           281
                           99.99
                           99.99
                           0
                           1428.0
     

     
     
131086
                           gb|AAG06095.1|AE004698_11
                           (AE004698) hypothetical protein PA2707 [Pseudomonas aeruginosa PAO1]
                           281
                           99.99
                           99.99
                           0
                           1428.0
     

     
     
131087
                           gb|AAN70146.1|AE016654_3
                           (AE016791) ATPase, AAA family [Pseudomonas putida KT2440]
                           281
                           94.30
                           97.50
                           0
                           1364.0
     

     
     
131088
                           gb|AAO57371.1|
                           (AE016870) ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
                           281
                           92.88
                           97.50
                           0
                           1354.0
     

     
     
131090
                           emb|CAE29059.1|
                           (BX572604) AAA ATPase [Rhodopseudomonas palustris CGA009]
                           281
                           75.80
                           86.47
                           1
                           1115.0
     

     






      

          
GC ORFID: 45818How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2707Glimmer Score: 

          
Start: 2433527Stop: 2432682

          
Length: 846


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2707 translation of PA2707Homolog Bit Score 554.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1530 (ORF: BLASTX 526.0), t_PA2707 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTCGAAGGCACCCAGTCCTACGTCGCCACCGACGACCTCAAGCTCGCGGTCAACGCCGCCATCACC 
CTGCAGCGGCCGCTGCTGGTGAAGGGCGAACCGGGCACCGGCAAGACCATGCTCGCCGAGCAGCTGGCCGAG 
TCCTTCGGCGCCAAGCTGATCACCTGGCACATCAAGTCCACCACCAAGGCCCACCAGGGCCTCTACGAGTAC 
GATGCGGTAAGCCGCCTGCGCGATTCGCAGCTGGGCGTGGACAAGGTCCACGACGTGCGCAACTACATCAAG 
AAGGGCAAGCTCTGGGAGGCCTTCGAGGCCGAGGAGCGGGTGATCCTGCTGATCGACGAGATCGACAAGGCC 
GACATCGAGTTCCCCAACGACCTGTTGCAGGAACTCGACAAGATGGAGTTCTACGTCTACGAGACCAACGAA 
ACCATCAAGGCGAAGCAGCGCCCGATCATCATCATCACCTCGAACAACGAGAAGGAACTGCCCGACGCCTTC 
CTGCGCCGCTGTTTCTTCCACTACATCGCCTTCCCCGACCGCGAGACGTTGCAGAAGATCGTCGATGTGCAC 
TACCCGAACATCAAGCAGTCGCTGGTCAGCGAGGCGCTGGACATCTTCTTCGACGTGCGCAAGGTGCCCGGC 
CTGAAAAAGAAACCTTCGACTTCCGAGTTGGTCGACTGGCTGAAGCTGCTGATGGCCGACGAGATCGGCGAA 
GCGGTGCTGCGCGAACGCGATCCGACCAAGGCGATCCCGCCGCTGGCCGGCGCCCTGGTGAAGAACGAGCAG 
GACGTGCAGCTTCTCGAGCGCCTGGCGTTCATGAGCCGCCGCGCCAGCCGCTGA