ViewGene
Locus Name:
GeneID:
Location:

GeneID:2815
TrivialName: PA14_36270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36270
PAO1 Ortholog Locus:PA2199
Sequence Length:876
Protein Length:291
Start: 3231167
Stop: 3230292
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05587.1|AE004646_8 (AE004646) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 286/291 (98%), Positives = 288/291 (98%)
Sequence:
ATGAAAGTCGGATTTCTGGGCCTGGGCGGCATGGGCGCCGCCATGGCCACCCGCCTGGTGCAGGCGGGGCTC
GAAGTGACGCTGTGGAACCGTTCCGCGGCGGCCTGCGAGCCGCTGGTGGCGCTGGGCGCGACCAGGGCGGAG
GAGGTCGGCGAGCTGTTCGGCCTCGACGTGGTCATCAGCATGCTGGCGGACGACCAGGCGATTCGCGCCGTG
CTGCTCGACAGCGGTGCGCTCGAACGGGCGAGGCCGGGTCTCATCCACCTGAGCATGTCGACCCTGTCGCTC
GATTGCGTCGAGGCGCTCGACCAGGCACACCAGCGCCAGGGCATCGCGTTCGTCGCCGCGCCGGTGTTCGGC
CGCACCGACGTGGCCGAGGCCGGCAAGCTGAACATCGTCGTCGGCGGTCCGGAGGAAGCCATCGAGCAAGTC
AAGGCACTGCTGGAAATTATGGGACAGAAGACATGGTTTTTCGGAAAAGACCCGCGCAGCGCAATGGCGGTG
AAGATCTCTGGTAACTTCATGATCGCCAGCGCCATCGAAAGCATGGGCGAAAGCGTCGCCCTGGTGAAGCGC
CTGGGCGTCGAGCCCGGCCGGTTCATGGAACTCATGTCCTCGACGCTTTTCGATGCGCCTGTCTATCGCAAC
TACGGCCCGCAGATCGTCGAGCAGCGTTTCACCCCGGCCAGGTTCCGCCTGGTCCTCGGGTTGAAGGACGTC
GACCTGGCGCTGTCCGCCGGCAAGCGCCACAACGTGCCGCTGCCGCTGGCCAGCCTGTTGCACGACGTGTTG
CTCGAAGCCATCGCCCATGGCGACGGGGAATCGGACTGGACGGCGCTGGCGAAGGTAGCGTTGTCACGATCG
GGACAAATCTGA
Translation:
MKVGFLGLGGMGAAMATRLVQAGLEVTLWNRSAAACEPLVALGATRAEEVGELFGLDVVISMLADDQAIRAV
LLDSGALERARPGLIHLSMSTLSLDCVEALDQAHQRQGIAFVAAPVFGRTDVAEAGKLNIVVGGPEEAIEQV
KALLEIMGQKTWFFGKDPRSAMAVKISGNFMIASAIESMGESVALVKRLGVEPGRFMELMSSTLFDAPVYRN
YGPQIVEQRFTPARFRLVLGLKDVDLALSAGKRHNVPLPLASLLHDVLLEAIAHGDGESDWTALAKVALSRS
GQI*
AnnotationID:2823GeneID:2815
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:08
Gene Name:
Confidence Code:3
GeneProduct:putative 3-hydroxyisobutyrate dehydrogenase
Cell Localization:()
Synonyms:PA2199
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2084
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM39627.1| (AE012127) dehydrogenase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 291

 Score =  270 bits (691), Expect = 6e-72
 Identities = 136/290 (46%), Positives = 192/290 (66%)








 
Structural Features:
COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid 
dehydrogenases [Lipid metabolism]
CD-Length = 286 residues,  99.3% aligned
Score =  237 bits (606), Expect = 1e-63
Identities = 118/286 (41%), Positives = 172/286 (60%), Gaps = 5/286 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22776




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32554




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2815_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2815
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4560
                           PA2199_tr
                           translation of PA2199
                           291
                           98.28
                           98.96
                           0
                           1428.0
     

     
     
131080
                           gb|AAG05587.1|AE004646_8
                           (AE004646) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
                           291
                           98.28
                           98.96
                           0
                           1428.0
     

     
     
131081
                           gb|AAM39627.1|
                           (AE012127) dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           291
                           46.73
                           65.97
                           0
                           690.0
     

     
     
131082
                           gb|AAM35214.1|
                           (AE011657) dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
                           292
                           45.20
                           64.38
                           1
                           669.0
     

     
     
131083
                           emb|CAB12628.1|
                           (Z99108) yfjR [Bacillus subtilis subsp. subtilis str. 168]
                           294
                           36.73
                           54.08
                           36
                           476.0
     

     






      

          
GC ORFID: 45817How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2199Glimmer Score: 

          
Start: 1722749Stop: 1723624

          
Length: 876


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2199 translation of PA2199Homolog Bit Score 554.0

          
Other Homologs:  t_PA2199 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTCGGATTTCTGGGCCTGGGCGGCATGGGCGCCGCCATGGCCACCCGCCTGGTGCAGGCGGGGCTC 
GAAGTGACGCTGTGGAACCGTTCCGCGGCGGCCTGCGAGCCGCTGGTGGCGCTGGGCGCGACCAGGGCGGAG 
GAGGTCGGCGAGCTGTTCGGCCTCGACGTGGTCATCAGCATGCTGGCGGACGACCAGGCGATTCGCGCCGTG 
CTGCTCGACAGCGGTGCGCTCGAACGGGCGAGGCCGGGTCTCATCCACCTGAGCATGTCGACCCTGTCGCTC 
GATTGCGTCGAGGCGCTCGACCAGGCACACCAGCGCCAGGGCATCGCGTTCGTCGCCGCGCCGGTGTTCGGC 
CGCACCGACGTGGCCGAGGCCGGCAAGCTGAACATCGTCGTCGGCGGTCCGGAGGAAGCCATCGAGCAAGTC 
AAGGCACTGCTGGAAATTATGGGACAGAAGACATGGTTTTTCGGAAAAGACCCGCGCAGCGCAATGGCGGTG 
AAGATCTCTGGTAACTTCATGATCGCCAGCGCCATCGAAAGCATGGGCGAAAGCGTCGCCCTGGTGAAGCGC 
CTGGGCGTCGAGCCCGGCCGGTTCATGGAACTCATGTCCTCGACGCTTTTCGATGCGCCTGTCTATCGCAAC 
TACGGCCCGCAGATCGTCGAGCAGCGTTTCACCCCGGCCAGGTTCCGCCTGGTCCTCGGGTTGAAGGACGTC 
GACCTGGCGCTGTCCGCCGGCAAGCGCCACAACGTGCCGCTGCCGCTGGCCAGCCTGTTGCACGACGTGTTG 
CTCGAAGCCATCGCCCATGGCGACGGGGAATCGGACTGGACGGCGCTGGCGAAGGTAGCGTTGTCACGATCG 
GGACAAATCTGA