ViewGene
Locus Name:
GeneID:
Location:

GeneID:2814
TrivialName: PA14_46630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46630
PAO1 Ortholog Locus:PA1367
Sequence Length:837
Protein Length:278
Start: 4154793
Stop: 4155629
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04756.1|AE004566_2 (AE004566) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 276/278 (99%), Positives = 277/278 (99%)
Sequence:
ATGCCGGTTTCGTTACCCTTCGAGCAAGTCGATGTCTTCTCCGAACAGCCCTTCAAAGGCAACGCCGTTGCC
GTGGTGATTGGCGCCGACCGCCTGAGCAGCCAGCAAATGCTCGAGTTCGCCGCCTGGACCCAATTGAGCGAG
ACGACCTTCCTGCTGCGGCCGACCACTGCCGAAGCAGACTACCGCGTAAGAATCTTCACCCCGCTGCGGGAG
TTGCCCTTTGCCGGGCATCCGACGCTGGGGAGCTGCCAGGTCTGGCTGAACCAGGGGGGCGGCAATGCTGCT
GACGAGATCGTCCAGGAGTGTCTGGCGGGCCTGATCCGTATCCGCCGCAAGGGCGCCTTGCTGTCGTTCGCG
GCGCCTCCCCTGCTTCGTGGCGGAGCGGTCGAAGACGAGGTGTTGCGACGGATCGAGAGCGGGCTTGGCCTT
TCCCCGGGGCAGGTACTCGGCAGCCAATGGGTGGACAACGGACCCGGCTGGGTCGCCGTTCGGCTGGCCACG
CGTGACGAGGTCCTGGCCATTCGCCCGGACTACGCGCAGCTCGACGGGCTCAACGTGGGCGTGGTCGCACCC
TGGCAAGGTCCCCAGGCGGAGGCGGATGTGGAAGTGCGCGCCTTCATGGGCGAGGAACTCAATGAAGACCCC
GTCACCGGCAGCCTCAACGCGAGCCTGGCGCAATGGCTGATCGGCACGGGAGTCATGCCCGGGCGCTACACG
GCGAGCCAGGGCACGGCCTTGGGTCGCCGGGGGCGGATAAGCGTCGAGCAGATCGGCGGCGATATCTGGATC
GGCGGTGAGGTGCAGCCGGGCATGTCGGGGCAGGTCGTGTTCTGA
Translation:
MPVSLPFEQVDVFSEQPFKGNAVAVVIGADRLSSQQMLEFAAWTQLSETTFLLRPTTAEADYRVRIFTPLRE
LPFAGHPTLGSCQVWLNQGGGNAADEIVQECLAGLIRIRRKGALLSFAAPPLLRGGAVEDEVLRRIESGLGL
SPGQVLGSQWVDNGPGWVAVRLATRDEVLAIRPDYAQLDGLNVGVVAPWQGPQAEADVEVRAFMGEELNEDP
VTGSLNASLAQWLIGTGVMPGRYTASQGTALGRRGRISVEQIGGDIWIGGEVQPGMSGQVVF*
AnnotationID:2822GeneID:2814
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:44
Gene Name:
Confidence Code:3
GeneProduct:putative phenazine biosynthesis protein
Cell Localization:()
Synonyms:PA1367
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative epimerase
Functional Category Confidence Code:5
COGs:COG0384, pfam02567
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56127.1| (AE016865) phenazine biosynthesis protein, PhzF family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 280

 Score =  335 bits (860), Expect = 1e-91
 Identities = 162/276 (58%), Positives = 206/276 (74%), Gaps = 3/276 (1%)

>gb|AAL45063.1| (AE009355) phenazine biosynthesis protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 281

 Score =  255 bits (652), Expect = 2e-67
 Identities = 137/280 (48%), Positives = 178/280 (63%), Gaps = 6/280 (2%)






 
Structural Features:
COG0384, Predicted_epimerase, Predicted epimerase, PhzC/PhzF homolog 
CD-Length = 291 residues, 100.0% aligned
Score =  243 bits (622), Expect = 2e-65
Identities = 103/292 (35%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein. 
CD-Length = 288 residues,  99.3% aligned
Score =  169 bits (428), Expect = 4e-43
Identities = 87/287 (30%), Positives = 129/287 (44%), Gaps = 19/287 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22774




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37404




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2814_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2814
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4559
                           PA1367_tr
                           translation of PA1367
                           278
                           99.28
                           99.64
                           0
                           1427.0
     

     
     
131073
                           gb|AAG04756.1|AE004566_2
                           (AE004566) hypothetical protein PA1367 [Pseudomonas aeruginosa PAO1]
                           278
                           99.28
                           99.64
                           0
                           1427.0
     

     
     
131074
                           gb|AAO56127.1|
                           (AE016865) phenazine biosynthesis protein, PhzF family [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           57.80
                           73.40
                           6
                           859.0
     

     
     
131075
                           gb|AAQ60333.1|
                           (AE016919) probable phenazine biosynthesis protein [Chromobacterium violaceum ATCC 12472]
                           281
                           54.80
                           69.75
                           7
                           812.0
     

     
     
131076
                           gb|AAL45063.1|
                           (AE009355) phenazine biosynthesis protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           288
                           48.61
                           62.84
                           17
                           659.0
     

     






      

          
GC ORFID: 45816How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1367Glimmer Score: 

          
Start: 799116Stop: 798280

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1367 translation of PA1367Homolog Bit Score 554.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2218 (ORF: BLASTX 320.0), psyr_15may02_Scaffold11_revised_gene1801 (ORF: BLASTX 124.0), t_PA1367 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGTTTCGTTACCCTTCGAGCAAGTCGATGTCTTCTCCGAACAGCCCTTCAAAGGCAACGCCGTTGCC 
GTGGTGATTGGCGCCGACCGCCTGAGCAGCCAGCAAATGCTCGAGTTCGCCGCCTGGACCCAATTGAGCGAG 
ACGACCTTCCTGCTGCGGCCGACCACTGCCGAAGCAGACTACCGCGTAAGAATCTTCACCCCGCTGCGGGAG 
TTGCCCTTTGCCGGGCATCCGACGCTGGGGAGCTGCCAGGTCTGGCTGAACCAGGGGGGCGGCAATGCTGCT 
GACGAGATCGTCCAGGAGTGTCTGGCGGGCCTGATCCGTATCCGCCGCAAGGGCGCCTTGCTGTCGTTCGCG 
GCGCCTCCCCTGCTTCGTGGCGGAGCGGTCGAAGACGAGGTGTTGCGACGGATCGAGAGCGGGCTTGGCCTT 
TCCCCGGGGCAGGTACTCGGCAGCCAATGGGTGGACAACGGACCCGGCTGGGTCGCCGTTCGGCTGGCCACG 
CGTGACGAGGTCCTGGCCATTCGCCCGGACTACGCGCAGCTCGACGGGCTCAACGTGGGCGTGGTCGCACCC 
TGGCAAGGTCCCCAGGCGGAGGCGGATGTGGAAGTGCGCGCCTTCATGGGCGAGGAACTCAATGAAGACCCC 
GTCACCGGCAGCCTCAACGCGAGCCTGGCGCAATGGCTGATCGGCACGGGAGTCATGCCCGGGCGCTACACG 
GCGAGCCAGGGCACGGCCTTGGGTCGCCGGGGGCGGATAAGCGTCGAGCAGATCGGCGGCGATATCTGGATC 
GGCGGTGAGGTGCAGCCGGGCATGTCGGGGCAGGTCGTGTTCTGA