ViewGene
Locus Name:
GeneID:
Location:

GeneID:2813
TrivialName: PA14_21930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21930
PAO1 Ortholog Locus:PA3252
Sequence Length:840
Protein Length:279
Start: 1908689
Stop: 1907850
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06640.1|AE004747_13 (AE004747) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 279/279 (100%), Positives = 279/279 (100%)
Sequence:
ATGAAACGACTCTCCGGCAAATGGCTGGCGCTGCTGTTCCTGCTGCCCTTCGCGGCGTTCTTCGTGATTTTC
CAGATAGCGCCGCTGGCCTGGGTCGCGCTGAACAGCCTGAAGGCCAGCGATGCCTGGAGCCTGGCCAACTAC
CTCGAGCTGTTCGGCTCGCCCTTCTACCGCCAGGCGATCCGCCATAGCCTGGAGATCGCCGGCTGGTCGAGC
CTGCTCGGCCTGCTCATCGCGGTGCTCGGCAGCCATTCGCTGCGCCACGTCGACAGCCGCCTGCGCGACTTC
GTCATGGCCTTCTCCAACATGACCAGCAACTTCGCCGGGGTACCGCTGGCGTTCGCCTTCATCATCCTGCTC
GGCTTCAACGGCGCGCTGACCCTGTTGCTCAAGCAGGCCGGCTGGATCGACGACTTCAATCTCTACTCGAAG
ACCGGCCTGATAATCCTCTACACCTATTTCCAGATCCCCCTCGGGGTGATGCTGCTCTACCCGGCCTTCGAC
GCCCTGCGCGAGGACTGGCGCGAGTCCGCCGCGCTGCTCGGCGCCAACGGCTGGCAGTACTGGCGACACATC
GGCATCCCGGTGCTGACCCCGGCACTGCTGGGCACCTTCGTCATCCTCCTGGCCAATGCCCTCGGCGCCTAC
GCCACGGTGTACTCGCTGACCACCGGCAACTTCAACGTGATCCCGATCCGCATCGGCGCGCTGGTCGCCGGC
GACGTGTTCCCCGACCCGAACATGGCCAGCGCGCTGGCCATGGTGCTGGTCGGCCTGATGACCCTGATCACC
CTGGTCCACCAATGGCTGCTGCGCAGGAGCTACCATGTCGCGCGCTGA
Translation:
MKRLSGKWLALLFLLPFAAFFVIFQIAPLAWVALNSLKASDAWSLANYLELFGSPFYRQAIRHSLEIAGWSS
LLGLLIAVLGSHSLRHVDSRLRDFVMAFSNMTSNFAGVPLAFAFIILLGFNGALTLLLKQAGWIDDFNLYSK
TGLIILYTYFQIPLGVMLLYPAFDALREDWRESAALLGANGWQYWRHIGIPVLTPALLGTFVILLANALGAY
ATVYSLTTGNFNVIPIRIGALVAGDVFPDPNMASALAMVLVGLMTLITLVHQWLLRRSYHVAR*
AnnotationID:2821GeneID:2813
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:34
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA3252
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4132,COG1176
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57346.1| (AE016870) polyamine ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 280

 Score =  442 bits (1137), Expect = e-123
 Identities = 217/280 (77%), Positives = 251/280 (89%), Gaps = 1/280 (0%)

>gb|AAN67345.1|AE016360_11 (AE016780) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 279

 Score =  438 bits (1126), Expect = e-122
 Identities = 210/273 (76%), Positives = 248/273 (90%)

>dbj|BAC61695.1| (AP005085) putative permease of ABC transporter [Vibrio
           parahaemolyticus]
          Length = 299

 Score =  323 bits (828), Expect = 7e-88
 Identities = 154/264 (58%), Positives = 210/264 (79%)






 
Structural Features:
COG4132, ABC-type uncharacterized transport system, permease component
CD-Length = 282 residues, 100.0% aligned
Score =  336 bits (862), Expect = 3e-93
Identities = 135/283 (47%), Positives = 185/283 (65%), Gaps = 8/283 (2%)

COG1176, PotB, ABC-type spermidine/putrescine transport system, 
permease component I [Amino acid transport and metabolism]
CD-Length = 287 residues,  93.7% aligned
Score = 93.7 bits (233), Expect = 2e-20
Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 8/275 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22772




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32291




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2813_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2813
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4558
                           PA3252_tr
                           translation of PA3252
                           279
                           99.99
                           99.99
                           0
                           1430.0
     

     
     
131068
                           gb|AAG06640.1|AE004747_13
                           (AE004747) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           279
                           99.99
                           99.99
                           0
                           1430.0
     

     
     
131069
                           gb|AAO57346.1|
                           (AE016870) polyamine ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           280
                           77.50
                           89.64
                           1
                           1139.0
     

     
     
131070
                           gb|AAN67345.1|AE016360_11
                           (AE016780) ABC transporter, permease protein [Pseudomonas putida KT2440]
                           280
                           75.71
                           89.28
                           2
                           1119.0
     

     
     
131071
                           dbj|BAC61695.1|
                           (AP005085) putative permease of ABC transporter [Vibrio parahaemolyticus]
                           299
                           52.50
                           71.90
                           20
                           828.0
     

     






      

          
GC ORFID: 45815How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3252Glimmer Score: 

          
Start: 3045242Stop: 3046081

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3252 translation of PA3252Homolog Bit Score 555.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2678 (ORF: BLASTX 442.0), t_PA3252 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGACTCTCCGGCAAATGGCTGGCGCTGCTGTTCCTGCTGCCCTTCGCGGCGTTCTTCGTGATTTTC 
CAGATAGCGCCGCTGGCCTGGGTCGCGCTGAACAGCCTGAAGGCCAGCGATGCCTGGAGCCTGGCCAACTAC 
CTCGAGCTGTTCGGCTCGCCCTTCTACCGCCAGGCGATCCGCCATAGCCTGGAGATCGCCGGCTGGTCGAGC 
CTGCTCGGCCTGCTCATCGCGGTGCTCGGCAGCCATTCGCTGCGCCACGTCGACAGCCGCCTGCGCGACTTC 
GTCATGGCCTTCTCCAACATGACCAGCAACTTCGCCGGGGTACCGCTGGCGTTCGCCTTCATCATCCTGCTC 
GGCTTCAACGGCGCGCTGACCCTGTTGCTCAAGCAGGCCGGCTGGATCGACGACTTCAATCTCTACTCGAAG 
ACCGGCCTGATAATCCTCTACACCTATTTCCAGATCCCCCTCGGGGTGATGCTGCTCTACCCGGCCTTCGAC 
GCCCTGCGCGAGGACTGGCGCGAGTCCGCCGCGCTGCTCGGCGCCAACGGCTGGCAGTACTGGCGACACATC 
GGCATCCCGGTGCTGACCCCGGCACTGCTGGGCACCTTCGTCATCCTCCTGGCCAATGCCCTCGGCGCCTAC 
GCCACGGTGTACTCGCTGACCACCGGCAACTTCAACGTGATCCCGATCCGCATCGGCGCGCTGGTCGCCGGC 
GACGTGTTCCCCGACCCGAACATGGCCAGCGCGCTGGCCATGGTGCTGGTCGGCCTGATGACCCTGATCACC 
CTGGTCCACCAATGGCTGCTGCGCAGGAGCTACCATGTCGCGCGCTGA