ViewGene

Locus Name:
GeneID:
Location:

GeneID:2812
TrivialName: PA14_22460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22460
PAO1 Ortholog Locus:PA3226
Sequence Length:828
Protein Length:275
Start: 1955617
Stop: 1954790
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06614.1|AE004745_11 (AE004745) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 273/275 (99%), Positives = 274/275 (99%)
Sequence:
ATGCCTGACTTCCAGCACCGCGACTGCACCCTCGTCTACGACGACCATCCCGGACCCGCCGAGCGCGCGCCG
GTCCTGCTGTTGCACGGTCTGGGTTCGAGCGCCCGCGACTGGGAATACCAGTTGCCGGCCCTGCTGGGCCGC
TACCGCCTGCTGGTCCCGGACCTGCGTGGCCACGGCCGCTCCGGCAAGCCGCGCGGCGGCTACAGCATGGCC
GGCTTCGCCGAGGACTGCGCGGCGCTGCTCGACCGGCTCGGCTGCGGCCCGGTGCACCTGGTCGGCATCAGC
ATGGGCGGGATGATCGGCTTCCAGTTGGCCTGCGACCGCCCCGACCTGCTGCGCAGCCTGACCATCGTCAAC
AGCACTCCGGAAGTCATCCCGCGCAAGCCCCGCGAACACCTGGAAGTGGCCAAGCGCAGGCTCCTCTCGCGC
CTGCTCAGCCTGCGGACCATCGGCCGCGCCCTCGGCCGGCTGTTGTTTCCCAAGGCGGAACAGGCCGGGCTG
CGAGAAAAGATCGAGGCGCGCTGGGCGGAGAACGACAAGCGCGCCTACCTGGCCAGCCTCGACGCGATCATC
GGCTGGGGCGTGCAGGAACGATTGGCCGAGATCGCCTGTCCGACCCTGGTGATCAGCGCGGATCGCGACTAC
ACGCCGGTATCGCTGAAGCAGGCCTATTGCGAGCGGATCGCCGACGCCCGCCTGGTGGTGGTGGAGGACTCC
CGCCACGCCACGCCGATGGACCAACCCGAGATTTTCAACACCACCCTGCTCGGCTTCCTCGCCGATATCGAT
AAAACCAAGGAACAACCATGCTCAAACGTCTCCTGA
Translation:
MPDFQHRDCTLVYDDHPGPAERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMA
GFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRRLLSR
LLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDY
TPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS*
AnnotationID:2820GeneID:2812
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 12:12:32
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase, alpha/beta fold family
Cell Localization:()
Synonyms:PA3226
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00561,COG0596
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57545.1| (AE016870) hydrolase, alpha/beta fold family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 262

 Score =  320 bits (820), Expect = 6e-87
 Identities = 154/261 (59%), Positives = 197/261 (75%), Gaps = 3/261 (1%)

>gb|AAN70113.1|AE016651_3 (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 270

 Score =  303 bits (776), Expect = 7e-82
 Identities = 150/261 (57%), Positives = 187/261 (71%), Gaps = 3/261 (1%)
Structural Features:
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. 
CD-Length = 224 residues,  99.6% aligned
Score = 96.4 bits (239), Expect = 3e-21
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 14/223 (6%)

COG0596, MhpC, Predicted hydrolases or acyltransferases 
(alpha/beta hydrolase superfamily)
CD-Length = 282 residues,  94.7% aligned
Score =  121 bits (303), Expect = 8e-29
Identities = 88/269 (32%), Positives = 121/269 (44%), Gaps = 24/269 (8%)
Genomic Context:
Comment:
ReferenceID:5627
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22770
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32315
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2812_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2812

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4557 PA3226_tr translation of PA3226 275 99.27 99.63 0 1429.0
131065 gb|AAG06614.1|AE004745_11 (AE004745) probable hydrolase [Pseudomonas aeruginosa PAO1] 275 99.27 99.63 0 1429.0
131066 gb|AAO57545.1| (AE016870) hydrolase, alpha/beta fold family [Pseudomonas syringae pv. tomato str. DC3000] 275 56.72 72.00 13 819.0
131067 gb|AAN70113.1|AE016651_3 (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440] 277 55.59 69.31 9 782.0
GC ORFID: 45814How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3226Glimmer Score:
Start: 2998314Stop: 2999141
Length: 828
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3226 translation of PA3226Homolog Bit Score 555.0
Other Homologs: t_PA3226 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTGACTTCCAGCACCGCGACTGCACCCTCGTCTACGACGACCATCCCGGACCCGCCGAGCGCGCGCCG
GTCCTGCTGTTGCACGGTCTGGGTTCGAGCGCCCGCGACTGGGAATACCAGTTGCCGGCCCTGCTGGGCCGC
TACCGCCTGCTGGTCCCGGACCTGCGTGGCCACGGCCGCTCCGGCAAGCCGCGCGGCGGCTACAGCATGGCC
GGCTTCGCCGAGGACTGCGCGGCGCTGCTCGACCGGCTCGGCTGCGGCCCGGTGCACCTGGTCGGCATCAGC
ATGGGCGGGATGATCGGCTTCCAGTTGGCCTGCGACCGCCCCGACCTGCTGCGCAGCCTGACCATCGTCAAC
AGCACTCCGGAAGTCATCCCGCGCAAGCCCCGCGAACACCTGGAAGTGGCCAAGCGCAGGCTCCTCTCGCGC
CTGCTCAGCCTGCGGACCATCGGCCGCGCCCTCGGCCGGCTGTTGTTTCCCAAGGCGGAACAGGCCGGGCTG
CGAGAAAAGATCGAGGCGCGCTGGGCGGAGAACGACAAGCGCGCCTACCTGGCCAGCCTCGACGCGATCATC
GGCTGGGGCGTGCAGGAACGATTGGCCGAGATCGCCTGTCCGACCCTGGTGATCAGCGCGGATCGCGACTAC
ACGCCGGTATCGCTGAAGCAGGCCTATTGCGAGCGGATCGCCGACGCCCGCCTGGTGGTGGTGGAGGACTCC
CGCCACGCCACGCCGATGGACCAACCCGAGATTTTCAACACCACCCTGCTCGGCTTCCTCGCCGATATCGAT
AAAACCAAGGAACAACCATGCTCAAACGTCTCCTGA