ViewGene
Locus Name:
GeneID:
Location:

GeneID:2811
TrivialName: PA14_29070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29070
PAO1 Ortholog Locus:PA2712
Sequence Length:864
Protein Length:287
Start: 2515673
Stop: 2514810
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06100.1|AE004699_5 (AE004699) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 285/287 (99%), Positives = 286/287 (99%)
Sequence:
ATGTTTGCACTGAACAAATCCGCACTGGCCGGCCTGGCCAGCACCAGCCTCTTCGTCCTGCTCTGGAGCAGC
GGGGCCATCGCCTCGAAATGGGGCCTGGCGCACTCCTCGCCGTTCGCCTTCCTGGTGTTCCGCTTCGGCATC
GCCCTGGCCTGCCTGCTGCCGCTCGCCCCGCTGCTCAGGCTGCGCGCGCCGCGCAGCGCGCGTGAGCGCGGC
AAGGCCCTGCTCACCGGCCTGGTGATGCTGGGGGTCTATCCGATCTTCTATATCTTCTCGCTGAAGCTGCAG
GTCACTCCCGGCATGATGGCGACCATCCTCGGCGTGCAACCGATCCTCACCGCCGTCATCCTCGAACGCCGG
CAGTCGCCGGCGCGCCTGTTCGGCCTGCTGCTGGGCCTGGCCGGCCTGGTGCTGGTGGTCTACCAGGGCATC
GGTCTGGCCGGGATGTCCACGGCCGGCATCCTCTGCGCACTGCTGGCGCTGGCCGGCGTCACCGGCGGCTCG
ATCATGCAGAAGGGCATCCGCGAGAACCCGCTGGGCACCCTGCCCCTGCAGTACCTCGCCGGCCTCGGCCTG
TGCCTGGCGTTCGTGCCCTTCCAGCCGTTCGAGTTCGAATGGAACGCCGGCTTCCTGGTCCCCGCGCTATGG
ATGGGCGTCGTGGTCTCGGTGGGCGCGACCCTGCTGCTCTACCGGCTGATCGCCCAGGGCAACCTGGTCAAC
GTCACCAGCCTGTTCTACCTGGTGCCGGCGGTGACCGCGATCATGGACTTCATGGTCTTCGGCAACCGCCTC
GGCTGGCTCAGCCTGCTGGGCATGGGGCTGATCGTGGTGGGGCTGATGTTCGTCTTCCGCAAGGCCGGCTGA
Translation:
MFALNKSALAGLASTSLFVLLWSSGAIASKWGLAHSSPFAFLVFRFGIALACLLPLAPLLRLRAPRSARERG
KALLTGLVMLGVYPIFYIFSLKLQVTPGMMATILGVQPILTAVILERRQSPARLFGLLLGLAGLVLVVYQGI
GLAGMSTAGILCALLALAGVTGGSIMQKGIRENPLGTLPLQYLAGLGLCLAFVPFQPFEFEWNAGFLVPALW
MGVVVSVGATLLLYRLIAQGNLVNVTSLFYLVPAVTAIMDFMVFGNRLGWLSLLGMGLIVVGLMFVFRKAG*
AnnotationID:2819GeneID:2811
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 10:10:17
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2712
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70141.1|AE016653_12 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 293

 Score =  357 bits (917), Expect = 3e-98
 Identities = 185/285 (64%), Positives = 223/285 (78%)

>emb|CAE41475.1| (BX640414) putative membrane protein [Bordetella pertussis]
          Length = 287

 Score =  271 bits (693), Expect = 3e-72
 Identities = 151/282 (53%), Positives = 192/282 (68%), Gaps = 7/282 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22768




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36312




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2811_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2811
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4556
                           PA2712_tr
                           translation of PA2712
                           287
                           99.30
                           99.65
                           0
                           1429.0
     

     
     
131059
                           gb|AAG06100.1|AE004699_5
                           (AE004699) hypothetical protein PA2712 [Pseudomonas aeruginosa PAO1]
                           287
                           99.30
                           99.65
                           0
                           1429.0
     

     
     
131060
                           gb|AAN70141.1|AE016653_12
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           293
                           63.13
                           76.10
                           6
                           916.0
     

     
     
131061
                           emb|CAE12456.1|
                           (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           296
                           52.70
                           67.22
                           12
                           721.0
     

     
     
131062
                           emb|CAE41475.1|
                           (BX640414) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           292
                           52.39
                           66.78
                           10
                           697.0
     

     






      

          
GC ORFID: 45813How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2712Glimmer Score: 

          
Start: 2438253Stop: 2439116

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2712 translation of PA2712Homolog Bit Score 555.0

          
Other Homologs:  t_PA2712 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTGCACTGAACAAATCCGCACTGGCCGGCCTGGCCAGCACCAGCCTCTTCGTCCTGCTCTGGAGCAGC 
GGGGCCATCGCCTCGAAATGGGGCCTGGCGCACTCCTCGCCGTTCGCCTTCCTGGTGTTCCGCTTCGGCATC 
GCCCTGGCCTGCCTGCTGCCGCTCGCCCCGCTGCTCAGGCTGCGCGCGCCGCGCAGCGCGCGTGAGCGCGGC 
AAGGCCCTGCTCACCGGCCTGGTGATGCTGGGGGTCTATCCGATCTTCTATATCTTCTCGCTGAAGCTGCAG 
GTCACTCCCGGCATGATGGCGACCATCCTCGGCGTGCAACCGATCCTCACCGCCGTCATCCTCGAACGCCGG 
CAGTCGCCGGCGCGCCTGTTCGGCCTGCTGCTGGGCCTGGCCGGCCTGGTGCTGGTGGTCTACCAGGGCATC 
GGTCTGGCCGGGATGTCCACGGCCGGCATCCTCTGCGCACTGCTGGCGCTGGCCGGCGTCACCGGCGGCTCG 
ATCATGCAGAAGGGCATCCGCGAGAACCCGCTGGGCACCCTGCCCCTGCAGTACCTCGCCGGCCTCGGCCTG 
TGCCTGGCGTTCGTGCCCTTCCAGCCGTTCGAGTTCGAATGGAACGCCGGCTTCCTGGTCCCCGCGCTATGG 
ATGGGCGTCGTGGTCTCGGTGGGCGCGACCCTGCTGCTCTACCGGCTGATCGCCCAGGGCAACCTGGTCAAC 
GTCACCAGCCTGTTCTACCTGGTGCCGGCGGTGACCGCGATCATGGACTTCATGGTCTTCGGCAACCGCCTC 
GGCTGGCTCAGCCTGCTGGGCATGGGGCTGATCGTGGTGGGGCTGATGTTCGTCTTCCGCAAGGCCGGCTGA