ViewGene
Locus Name:
GeneID:
Location:

GeneID:281
TrivialName: PA14_40240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40240
PAO1 Ortholog Locus:PA1876
Sequence Length:2172
Protein Length:723
Start: 3587303
Stop: 3585132
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05265.1|AE004613_10 (AE004613) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 721/723 (99%), Positives = 723/723 (100%)
Sequence:
ATGGAAGCTGAGAAAACCCCGGATAACGTCGTGATCCTCAACCACGACCCCATCGTCGACCCGTTGCGCCAG
GGCCTGCTGCTGCTCTGCCGGCAGCTCGGCCGGCCACTCGGCGACGCCGAACTGGTGGACGGCATGCCGCTG
GAGCACGGTCGCCTGCCGTTGCACCTGGTGGCCCGCGCGTTGCGCCGCGCCGACATCACCGCCCAGGTCACG
CGCCAGCCGTTGCGCCGGATCGACCGCTACCTGCTGCCGGCCCTGCTGCTGCTCGACGACGGCCGCGCCCTG
GTGCTGGTGGGCAACGACGGCGAGCACGCCGAGGTGCTGGTGCCGCAGAGCGACGGCGGAAGCCAGAGGATG
CCGCTGGCCGAGCTGGAAGCGCTGTACAGCGGCACGGCGATCTTCGCCAAGTGTCGCTACCGGCCGGACGGG
CGGGTCGGCGACTACGCCAGCGCCTTGCCCGAGCACTGGTTCTTCGGCCCGCTCAAGCGGCTCTGGCGTTCC
TACGCCGAGGTCACCGCCGCGGCGCTGGTGGCCAACGTCCTGGCGGTCGCCTCGGCACTGTTCGCCATGCAG
GTCTACGACCGCGTGGTACCCAACGCGGCGTTCGACACCCTGTGGATCCTCGCCAGCGGCGTGGCCCTGGCG
ATCATCCTCGACGGGGTCCTGCGGATCATGCGCGGCCACCTGCTCAACGTGCTCGGCAAGCGCCTCGACCTG
CAACTCTCGACCCTGCTGTTCTCCCGCGTGCTGAGCACCCGGGTCGCCGCCAAGCCGGCGTCGATGGGCGCC
TTCAGTACCCAGGTGCGGGAGTTCGAGTCGGTGCGCGAGTTCTTTACCTCGTCCAGCGCGGCGCTGATCAGC
GACCTGCCGTTCGTGGCGATCTTCCTGCTGATCATCGCCGTGATCGGCGGCCATGTGGTCTGGGTGCCGCTG
GTGGCCTGCGTGCTGATGATCCTGCCGGGGCTGCTGACCCAGCGCCTGCTCGGCCACCTGTCGCGGCAGAAC
CTGCGCGAAGGGGCGATGAAGAACGGCGTGCTGCTGGAAGCCTTCGAGCACCTGGAGACGGTCAAGGCGACT
CGCGCCGAAGGCCGCTGCCTGCACCAGTGGGAAACCCTGACCGGCGAACTGGCCGGCACGGCGATGAAAACC
CATACCCTGGCCTCGACCCTGAGCTACTCGGCGAGCATCGTCCAGCAGCTCTGCTACGTCGGCGTGGTGGTC
TTCGGCGTCTATCGGATCAGCGAGGGCGCGATGACCGTCGGCGGCCTGGTGGCCTGCTCGATCCTCGCCTCG
CGGGCCATCGCACCGCTGTCGCAGGCGGCCGGCATCCTCGGTCGCTGGCAGCACACCAAGGTGGCGATGGAA
GGCCTTGATCAACTGATGAGCGCCGAGCAGGAGCGCCCCCAGGGCAAGCGCTTCGTGCACAAGGAGCGCCTG
CAGGGACATTACCGCCTGGAGGGCGTGCGCCTGGCCCACGGCGACAGCCCGCCGGTGGTCGACGTGCAGGCC
CTGAACATCCGCGCTGGCGAGCGGGTGGCGCTGCTCGGCGGCAACGGCGCCGGCAAGTCGACCCTGCTGCGC
CTGCTCAGCGGCCTGCTCGACGCGCAGGCGGGACGCCTGCTGCTGGACGACGTCAGCCTGACCCAGATCGAC
CCAGCCGACCGCCAGCGCGGTATCGGCTACCTGCCGCAGGACGTGGCGCTGTTCCATGGCAGCCTGCGCGAC
AACCTCAACCTGGAGAACGCCGCGCTGGGCGACGAGGAACTGCTGGAGACCCTCGACGGGGTCGGCCTGGGC
GCCTTCGTCCGCGGCCACCCGCTGGGGCTGGACATGCCGATCCAGGGCAATGCCAGCCTGTCCGGCGGCCAG
CGCCAGGCCGTCGGGCTGGCCCGGGTGCTGCTACAGGACCCTCCGATCCTGCTGCTCGACGAGCCGACCGCG
GCCTTCGACCAGGGCAGCGAGAAACAGGTCATCGACTACCTGCAGCAATGGTTGGGCAAGCGCACCCTGGTC
ATCACCACCCACAAGAAAAGCATGCTCGCCCTGGTCGAGCGTGCGGTGGTCCTGCGCCAGGGCAGGGTGATC
ATGGACGGCCCGCTGGAGCAGGTGGTGCAGGGCAACCAGGTACAGGCACCGCAGGCCGCCGAAGGAGGCAAC
CATGGACTCTGA
Translation:
MEAEKTPDNVVILNHDPIVDPLRQGLLLLCRQLGRPLGDAELVDGMPLEHGRLPLHLVARALRRADITAQVT
RQPLRRIDRYLLPALLLLDDGRALVLVGNDGEHAEVLVPQSDGGSQRMPLAELEALYSGTAIFAKCRYRPDG
RVGDYASALPEHWFFGPLKRLWRSYAEVTAAALVANVLAVASALFAMQVYDRVVPNAAFDTLWILASGVALA
IILDGVLRIMRGHLLNVLGKRLDLQLSTLLFSRVLSTRVAAKPASMGAFSTQVREFESVREFFTSSSAALIS
DLPFVAIFLLIIAVIGGHVVWVPLVACVLMILPGLLTQRLLGHLSRQNLREGAMKNGVLLEAFEHLETVKAT
RAEGRCLHQWETLTGELAGTAMKTHTLASTLSYSASIVQQLCYVGVVVFGVYRISEGAMTVGGLVACSILAS
RAIAPLSQAAGILGRWQHTKVAMEGLDQLMSAEQERPQGKRFVHKERLQGHYRLEGVRLAHGDSPPVVDVQA
LNIRAGERVALLGGNGAGKSTLLRLLSGLLDAQAGRLLLDDVSLTQIDPADRQRGIGYLPQDVALFHGSLRD
NLNLENAALGDEELLETLDGVGLGAFVRGHPLGLDMPIQGNASLSGGQRQAVGLARVLLQDPPILLLDEPTA
AFDQGSEKQVIDYLQQWLGKRTLVITTHKKSMLALVERAVVLRQGRVIMDGPLEQVVQGNQVQAPQAAEGGN
HGL*
AnnotationID:291GeneID:281
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 10:10:50
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding/permease fusion ABC transporter
Cell Localization:()
Synonyms:PA1876
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2274,COG1132,COG4618
Secondary Functional Category(ies):secreted factors (toxins, enzymes, alginate)
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66429.1|AE016271_2 (AE016777) protein secretion ABC efflux system, permease and
           ATP-binding protein [Pseudomonas putida KT2440]
          Length = 722

 Score =  485 bits (1249), Expect = e-136
 Identities = 265/649 (40%), Positives = 403/649 (62%), Gaps = 4/649 (0%)

>dbj|BAC63079.1| (AP005089) toxin secretion ATP-binding protein [Vibrio
           parahaemolyticus]
          Length = 704

 Score =  484 bits (1246), Expect = e-136
 Identities = 265/691 (38%), Positives = 414/691 (59%), Gaps = 6/691 (0%)

>gb|AAG54839.1|AE005229_2 (AE005229) putative cytoplasmic membrane export protein
           [Escherichia coli O157:H7 EDL933]
          Length = 720

 Score =  483 bits (1243), Expect = e-135
 Identities = 260/632 (41%), Positives = 394/632 (62%), Gaps = 4/632 (0%)








 
Structural Features:
COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, 
contain an N-terminal double-glycine peptidase domain 
[Defense mechanisms]
CD-Length = 709 residues,  98.3% aligned
Score =  608 bits (1570), Expect = 7e-175
Identities = 246/702 (35%), Positives = 379/702 (53%), Gaps = 8/702 (1%)

COG1132, MdlB, ABC-type multidrug transport system, 
ATPase and permease components 
[Defense mechanisms]
CD-Length = 567 residues,  97.0% aligned
Score =  263 bits (674), Expect = 4e-71
Identities = 152/554 (27%), Positives = 263/554 (47%), Gaps = 12/554 (2%)

COG4618, ArpD, ABC-type protease/lipase transport system, 
ATPase and permease components
CD-Length = 580 residues,  95.0% aligned
Score =  255 bits (653), Expect = 1e-68
Identities = 149/556 (26%), Positives = 265/556 (47%), Gaps = 8/556 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:565




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17707




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37070




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:281_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:281
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
466
                           PA1876_tr
                           translation of PA1876
                           723
                           99.72
                           99.99
                           0
                           3637.0
     

     
     
24415
                           gb|AAG05265.1|AE004613_10
                           (AE004613) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
                           723
                           99.72
                           99.99
                           0
                           3637.0
     

     
     
24416
                           gb|AAN66429.1|AE016271_2
                           (AE016777) protein secretion ABC efflux system, permease and ATP-binding protein [Pseudomonas putida KT2440]
                           749
                           37.78
                           56.87
                           53
                           1256.0
     

     
     
24418
                           dbj|BAB33966.1|
                           (AP002552) putative ATP-binding component of a transport system [Escherichia coli O157:H7]
                           741
                           37.78
                           56.95
                           53
                           1245.0
     

     
     
24419
                           emb|CAD84070.1|
                           (BX321856) ABC transporter, fused permease and ATPase domains [Nitrosomonas europaea ATCC 19718]
                           752
                           37.63
                           56.38
                           45
                           1227.0
     

     






      

          
GC ORFID: 43283How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1876Glimmer Score: 

          
Start: 1366607Stop: 1368778

          
Length: 2172


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1876 translation of PA1876Homolog Bit Score 1405.0

          
Other Homologs:  t_PA1876 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAGCTGAGAAAACCCCGGATAACGTCGTGATCCTCAACCACGACCCCATCGTCGACCCGTTGCGCCAG 
GGCCTGCTGCTGCTCTGCCGGCAGCTCGGCCGGCCACTCGGCGACGCCGAACTGGTGGACGGCATGCCGCTG 
GAGCACGGTCGCCTGCCGTTGCACCTGGTGGCCCGCGCGTTGCGCCGCGCCGACATCACCGCCCAGGTCACG 
CGCCAGCCGTTGCGCCGGATCGACCGCTACCTGCTGCCGGCCCTGCTGCTGCTCGACGACGGCCGCGCCCTG 
GTGCTGGTGGGCAACGACGGCGAGCACGCCGAGGTGCTGGTGCCGCAGAGCGACGGCGGAAGCCAGAGGATG 
CCGCTGGCCGAGCTGGAAGCGCTGTACAGCGGCACGGCGATCTTCGCCAAGTGTCGCTACCGGCCGGACGGG 
CGGGTCGGCGACTACGCCAGCGCCTTGCCCGAGCACTGGTTCTTCGGCCCGCTCAAGCGGCTCTGGCGTTCC 
TACGCCGAGGTCACCGCCGCGGCGCTGGTGGCCAACGTCCTGGCGGTCGCCTCGGCACTGTTCGCCATGCAG 
GTCTACGACCGCGTGGTACCCAACGCGGCGTTCGACACCCTGTGGATCCTCGCCAGCGGCGTGGCCCTGGCG 
ATCATCCTCGACGGGGTCCTGCGGATCATGCGCGGCCACCTGCTCAACGTGCTCGGCAAGCGCCTCGACCTG 
CAACTCTCGACCCTGCTGTTCTCCCGCGTGCTGAGCACCCGGGTCGCCGCCAAGCCGGCGTCGATGGGCGCC 
TTCAGTACCCAGGTGCGGGAGTTCGAGTCGGTGCGCGAGTTCTTTACCTCGTCCAGCGCGGCGCTGATCAGC 
GACCTGCCGTTCGTGGCGATCTTCCTGCTGATCATCGCCGTGATCGGCGGCCATGTGGTCTGGGTGCCGCTG 
GTGGCCTGCGTGCTGATGATCCTGCCGGGGCTGCTGACCCAGCGCCTGCTCGGCCACCTGTCGCGGCAGAAC 
CTGCGCGAAGGGGCGATGAAGAACGGCGTGCTGCTGGAAGCCTTCGAGCACCTGGAGACGGTCAAGGCGACT 
CGCGCCGAAGGCCGCTGCCTGCACCAGTGGGAAACCCTGACCGGCGAACTGGCCGGCACGGCGATGAAAACC 
CATACCCTGGCCTCGACCCTGAGCTACTCGGCGAGCATCGTCCAGCAGCTCTGCTACGTCGGCGTGGTGGTC 
TTCGGCGTCTATCGGATCAGCGAGGGCGCGATGACCGTCGGCGGCCTGGTGGCCTGCTCGATCCTCGCCTCG 
CGGGCCATCGCACCGCTGTCGCAGGCGGCCGGCATCCTCGGTCGCTGGCAGCACACCAAGGTGGCGATGGAA 
GGCCTTGATCAACTGATGAGCGCCGAGCAGGAGCGCCCCCAGGGCAAGCGCTTCGTGCACAAGGAGCGCCTG 
CAGGGACATTACCGCCTGGAGGGCGTGCGCCTGGCCCACGGCGACAGCCCGCCGGTGGTCGACGTGCAGGCC 
CTGAACATCCGCGCTGGCGAGCGGGTGGCGCTGCTCGGCGGCAACGGCGCCGGCAAGTCGACCCTGCTGCGC 
CTGCTCAGCGGCCTGCTCGACGCGCAGGCGGGACGCCTGCTGCTGGACGACGTCAGCCTGACCCAGATCGAC 
CCAGCCGACCGCCAGCGCGGTATCGGCTACCTGCCGCAGGACGTGGCGCTGTTCCATGGCAGCCTGCGCGAC 
AACCTCAACCTGGAGAACGCCGCGCTGGGCGACGAGGAACTGCTGGAGACCCTCGACGGGGTCGGCCTGGGC 
GCCTTCGTCCGCGGCCACCCGCTGGGGCTGGACATGCCGATCCAGGGCAATGCCAGCCTGTCCGGCGGCCAG 
CGCCAGGCCGTCGGGCTGGCCCGGGTGCTGCTACAGGACCCTCCGATCCTGCTGCTCGACGAGCCGACCGCG 
GCCTTCGACCAGGGCAGCGAGAAACAGGTCATCGACTACCTGCAGCAATGGTTGGGCAAGCGCACCCTGGTC 
ATCACCACCCACAAGAAAAGCATGCTCGCCCTGGTCGAGCGTGCGGTGGTCCTGCGCCAGGGCAGGGTGATC 
ATGGACGGCCCGCTGGAGCAGGTGGTGCAGGGCAACCAGGTACAGGCACCGCAGGCCGCCGAAGGAGGCAAC 
CATGGACTCTGA