ViewGene
Locus Name:
GeneID:
Location:

GeneID:2807
TrivialName: PA14_67190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67190
PAO1 Ortholog Locus:
Sequence Length:882
Protein Length:293
Start: 5997744
Stop: 5996863
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08473.1|AE004921_10 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 262/283 (92%), Positives = 271/283 (95%), Gaps = 1/283 (0%)
Sequence:
GTGATTCGGCTAATGGCTATTGGAATATGGGCTGTACTTTGTCTCGCAGCAGTTCCCGCTATGGCTGACAGC
AAGCCTTTTGTCTGCGTTAACGAAAAGGACCATCTACCCCCTCTGGACCCGCAGGCCGATGCTTGGTATCGC
GAAGCGGCGACCCTGGCCAAGCCCGATACCTTGCGTCCGTGGCCTCGTATCGTCGATCTATACAGTAAGGCA
GTTGAGCGTGGTCACTGGAAGGCTATGCATAACTTGGCGAGCCTCTATCGTACCGGTTGGCCAGGCGGTGTG
GAGAAGGATACTCAGAAAGCTCTAGATCTCTACCAGAAGATGATCGATTTGAAGGTTCCTCAAGGTTTCTAC
GATATGGCGGCAATGATCGGGAGTCGCGCTGGCGTCAAGAATCCTGCGACTGATGGACTTACTTTTCTCGAT
AAGGCTGCAAGCTTGGGTAATCCACCAGCATTAACTGAGTTAGGAAGGCTATATATATATGTTGCTGGTCAG
GATGAGTTGGGGCTGAAATATACGAACTGTGCTGCAGGCCAGGGCTATGCTCCTGCCAATTACGAACTGGCG
ATGTACTATCGTTTGGTGGCACATAACTACCCAAAGGCGGCAGGCTATTACCTTCTTGCTGCAAGCCAAGGA
AATAATGATGCTGCCTTCTTCATGTCCGGAGTTTTTGATAAGACTAGTCCCGATGTTGACAGAATGTGGTAC
GCCCCCGATGAGAGGCTACACAAACTATATGATGGTATTTACGACCAACTTTCCGCTGATCCTGATTTGCGT
TTTCCCAACTTGATAAAGGACCATCCTCTGCCTCCTCACCCGACCCAGGGCTACGACGCAGATCGGCCCGAC
TGGAAATCGGGGCAGTGA
Translation:
MIRLMAIGIWAVLCLAAVPAMADSKPFVCVNEKDHLPPLDPQADAWYREAATLAKPDTLRPWPRIVDLYSKA
VERGHWKAMHNLASLYRTGWPGGVEKDTQKALDLYQKMIDLKVPQGFYDMAAMIGSRAGVKNPATDGLTFLD
KAASLGNPPALTELGRLYIYVAGQDELGLKYTNCAAGQGYAPANYELAMYYRLVAHNYPKAAGYYLLAASQG
NNDAAFFMSGVFDKTSPDVDRMWYAPDERLHKLYDGIYDQLSADPDLRFPNLIKDHPLPPHPTQGYDADRPD
WKSGQ*
AnnotationID:2815GeneID:2807
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 13:01:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0790
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9951382|gb|AAG08473.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
 gi|15600281|ref|NP_253775.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
Length=293

 Score =  555 bits (1430),  Expect = 8e-157
 Identities = 262/283 (92%), Positives = 271/283 (95%), Gaps = 1/283 (0%)

gi|9951381|gb|AAG08472.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
 gi|15600280|ref|NP_253774.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
Length=289

 Score =  485 bits (1248),  Expect = 1e-135
 Identities = 226/289 (78%), Positives = 247/289 (85%), Gaps = 0/289 (0%)

gi|9951380|gb|AAG08471.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
 gi|15600279|ref|NP_253773.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
Length=213

 Score =  345 bits (885),  Expect = 1e-93
 Identities = 160/210 (76%), Positives = 179/210 (85%), Gaps = 0/210 (0%)








 
Structural Features:
COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].
             CD-Length = 292 residues,  99.7% aligned
             Score =  105 bits (262), Expect = 7e-24






   
Genomic Context:






   
Comment:
Neighboring genes 2807 (PA14_67190) and 3162 (PA14_67210) each have homology to PA5088, and flank 
PA5087 ortholog (2524, PA14_67200).  3162 (PA14_67210) is in the analogous position as PA5088.


















    ReferenceID:14673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22760




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34966




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2807_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2807
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4550
                           PA5088_tr
                           translation of PA5088
                           301
                           87.70
                           90.69
                           16
                           1427.0
     

     
     
130930
                           gb|AAG08473.1|AE004921_10
                           (AE004921) hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
                           301
                           87.70
                           90.69
                           16
                           1427.0
     

     
     
4551
                           PA5087_tr
                           translation of PA5087
                           293
                           77.13
                           84.30
                           4
                           1248.0
     

     
     
130931
                           gb|AAG08472.1|AE004921_9
                           (AE004921) hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
                           293
                           77.13
                           84.30
                           4
                           1248.0
     

     
     
4552
                           PA5086_tr
                           translation of PA5086
                           293
                           54.60
                           61.43
                           80
                           883.0
     

     






      

          
GC ORFID: 45809How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5088Glimmer Score: 

          
Start: 5261429Stop: 5260548

          
Length: 882


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5088 translation of PA5088Homolog Bit Score 555.0

          
Other Homologs:  t_PA5087 (ORF: BLASTX 485.0), t_PA5086 (ORF: BLASTX 345.0)

          
GC ORF Sequence

           
GTGATTCGGCTAATGGCTATTGGAATATGGGCTGTACTTTGTCTCGCAGCAGTTCCCGCTATGGCTGACAGC 
AAGCCTTTTGTCTGCGTTAACGAAAAGGACCATCTACCCCCTCTGGACCCGCAGGCCGATGCTTGGTATCGC 
GAAGCGGCGACCCTGGCCAAGCCCGATACCTTGCGTCCGTGGCCTCGTATCGTCGATCTATACAGTAAGGCA 
GTTGAGCGTGGTCACTGGAAGGCTATGCATAACTTGGCGAGCCTCTATCGTACCGGTTGGCCAGGCGGTGTG 
GAGAAGGATACTCAGAAAGCTCTAGATCTCTACCAGAAGATGATCGATTTGAAGGTTCCTCAAGGTTTCTAC 
GATATGGCGGCAATGATCGGGAGTCGCGCTGGCGTCAAGAATCCTGCGACTGATGGACTTACTTTTCTCGAT 
AAGGCTGCAAGCTTGGGTAATCCACCAGCATTAACTGAGTTAGGAAGGCTATATATATATGTTGCTGGTCAG 
GATGAGTTGGGGCTGAAATATACGAACTGTGCTGCAGGCCAGGGCTATGCTCCTGCCAATTACGAACTGGCG 
ATGTACTATCGTTTGGTGGCACATAACTACCCAAAGGCGGCAGGCTATTACCTTCTTGCTGCAAGCCAAGGA 
AATAATGATGCTGCCTTCTTCATGTCCGGAGTTTTTGATAAGACTAGTCCCGATGTTGACAGAATGTGGTAC 
GCCCCCGATGAGAGGCTACACAAACTATATGATGGTATTTACGACCAACTTTCCGCTGATCCTGATTTGCGT 
TTTCCCAACTTGATAAAGGACCATCCTCTGCCTCCTCACCCGACCCAGGGCTACGACGCAGATCGGCCCGAC 
TGGAAATCGGGGCAGTGA