ViewGene
Locus Name:
GeneID:
Location:

GeneID:2806
TrivialName: PA14_65160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65160
PAO1 Ortholog Locus:PA4933
Sequence Length:870
Protein Length:289
Start: 5808398
Stop: 5807529
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08318.1|AE004906_6 (AE004906) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/289 (100%), Positives = 289/289 (100%)
Sequence:
ATGCGCGCACTGGCTGAGTTCACCATGCGCGGCCGCATGCAGGCCACGCTCGCCGTGGCAGGCTCCGCGGTT
GTTCCACTGTTGTTCTGGCTGAGTGCCGCCGCCGGTAGCCTGGTGCTGCTGCGGCGCGGATTCGGCGACGCC
TTCGGCGTCCTGGCCTGGGCGGTGCTACCGGCGATGTTCTGGTGGTACCTGGGCGATCCGAGCATCCTTCTG
GTCCTGCTCGGTACCCTGACGCTGGCGCAGATCCTGCGCGCCAGCACGTCCTGGAGCCATGTGCTGCTGGGC
AGTGTTGCAGTTGGCGTGGTATTCGCGCTGGTGCTGGGGCATACCTCCAGCGAGCTGATCGGCGCCCTGGCG
ACGGAAGTCACCAAGGTCCTGACCCAGCTTCGCGGGGAGTCCCAGCTGTCGGGCGAAGAGCTGGACAAGTTG
CAGGTGGCGCTGGTGCCGACCCTGACCGGGGTCATGGCTTCCTCGCTGCAGGTGACCTGCCTGCTCTGCCTG
ATGCTCGCGCGGTACTGGCAGGCTTCGCTGTACAACCCGGGCGGCTTCGGCCGCGAATTCCGGAGTTTGCGG
CTGGCGCCGGCGGTTGCCGTGATCCTGCTGCTGGGGGCCGTCGTGGTCCCGGCGCTGGAAGTGCAGGCCGCG
GTGCTCGGTCCGTTGTGCAGCGTGCCGCTGATCATCGCCGGCGTGGCGCTCGGGCATGGCCTGATCGCCCTG
AAGCGCCTCGCGGGTGGTTGGCTGGTGGGCCTGTACCTGGCTGTATTGCTGCTGGGGAACCTGATCTGTCTT
TTAGCGGTTGTCGACAGTCTGTTTGATTTTCGTGGACGCCTGGCCCGGCGCCAGGGTTCCACGAACGGTGAA
GGTTAA
Translation:
MRALAEFTMRGRMQATLAVAGSAVVPLLFWLSAAAGSLVLLRRGFGDAFGVLAWAVLPAMFWWYLGDPSILL
VLLGTLTLAQILRASTSWSHVLLGSVAVGVVFALVLGHTSSELIGALATEVTKVLTQLRGESQLSGEELDKL
QVALVPTLTGVMASSLQVTCLLCLMLARYWQASLYNPGGFGREFRSLRLAPAVAVILLLGAVVVPALEVQAA
VLGPLCSVPLIIAGVALGHGLIALKRLAGGWLVGLYLAVLLLGNLICLLAVVDSLFDFRGRLARRQGSTNGE
G*
AnnotationID:2814GeneID:2806
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 12:12:12
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4933
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58359.1| (AE016873) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 298

 Score =  310 bits (794), Expect = 6e-84






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22758




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2806
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4549
                           PA4933_tr
                           translation of PA4933
                           289
                           99.99
                           99.99
                           0
                           1430.0
     

     
     
130927
                           gb|AAG08318.1|AE004906_6
                           (AE004906) hypothetical protein PA4933 [Pseudomonas aeruginosa PAO1]
                           289
                           99.99
                           99.99
                           0
                           1430.0
     

     
     
130928
                           gb|AAO58359.1|
                           (AE016873) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           299
                           56.52
                           72.24
                           11
                           805.0
     

     
     
130929
                           gb|AAN70444.1|AE016685_9
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           294
                           49.65
                           63.26
                           12
                           660.0
     

     






      

          
GC ORFID: 45808How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4933Glimmer Score: 

          
Start: 5072079Stop: 5071210

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4933 translation of PA4933Homolog Bit Score 555.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3441 (ORF: BLASTX 312.0), t_PA4933 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCACTGGCTGAGTTCACCATGCGCGGCCGCATGCAGGCCACGCTCGCCGTGGCAGGCTCCGCGGTT 
GTTCCACTGTTGTTCTGGCTGAGTGCCGCCGCCGGTAGCCTGGTGCTGCTGCGGCGCGGATTCGGCGACGCC 
TTCGGCGTCCTGGCCTGGGCGGTGCTACCGGCGATGTTCTGGTGGTACCTGGGCGATCCGAGCATCCTTCTG 
GTCCTGCTCGGTACCCTGACGCTGGCGCAGATCCTGCGCGCCAGCACGTCCTGGAGCCATGTGCTGCTGGGC 
AGTGTTGCAGTTGGCGTGGTATTCGCGCTGGTGCTGGGGCATACCTCCAGCGAGCTGATCGGCGCCCTGGCG 
ACGGAAGTCACCAAGGTCCTGACCCAGCTTCGCGGGGAGTCCCAGCTGTCGGGCGAAGAGCTGGACAAGTTG 
CAGGTGGCGCTGGTGCCGACCCTGACCGGGGTCATGGCTTCCTCGCTGCAGGTGACCTGCCTGCTCTGCCTG 
ATGCTCGCGCGGTACTGGCAGGCTTCGCTGTACAACCCGGGCGGCTTCGGCCGCGAATTCCGGAGTTTGCGG 
CTGGCGCCGGCGGTTGCCGTGATCCTGCTGCTGGGGGCCGTCGTGGTCCCGGCGCTGGAAGTGCAGGCCGCG 
GTGCTCGGTCCGTTGTGCAGCGTGCCGCTGATCATCGCCGGCGTGGCGCTCGGGCATGGCCTGATCGCCCTG 
AAGCGCCTCGCGGGTGGTTGGCTGGTGGGCCTGTACCTGGCTGTATTGCTGCTGGGGAACCTGATCTGTCTT 
TTAGCGGTTGTCGACAGTCTGTTTGATTTTCGTGGACGCCTGGCCCGGCGCCAGGGTTCCACGAACGGTGAA 
GGTTAA