ViewGene
Locus Name:
GeneID:
Location:

GeneID:2805
TrivialName: PA14_64120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64120
PAO1 Ortholog Locus:PA4849
Sequence Length:867
Protein Length:288
Start: 5714904
Stop: 5715770
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08234.1|AE004898_5 (AE004898) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/288 (99%), Positives = 286/288 (99%)
Sequence:
ATGGAACGCATCCGCCGCTGGTACCGCCAATCGCTGGCCGCCGCGACCGAGGCCGCGACCTGCTTCGCCCTG
GGCTTCAGGGAAAGCCTGCAACCCGCCGCACTCTTCCGCTCCGCGAGCCTGTGCATTCTCGTCAGCGTGCTG
TGCACCTGGCTGTTCGTGCATTTCTTCGAACCGATCATCCGCCTCTGCGGCTGGGCCGCGCTGTACACGGCA
TTCAGCGTGGCCAACTTCGCCCTGATCCCCAGCGGCTCGCTGATCGAGGCCGGCAGCGGTGGCCCGTACTTC
GATCCGCTGGCGGCCTTCAACGGCCTGGCAGGACTGGCGCAACTGGCGTTCTATTTCGTCGGCTATGCCGCG
CTGTTCTTCGTCGCCCTGTACGCCGCCAGCATCGTCTTCGGCATCCGCCTGTGCCTGCGCATCGGCCTGCTC
GGACAACTGAAGGAACAGGTCCGCCAACGCTACCCGCGACTGGCACCTGCCTCCGGCGAAAGGATCTCGCTG
TGGCGTGCCGCCGGCTTCCGCCTGGCACCCTGGCTGGGCGTTTCCGGATCGATCCTGGTCGGCCTGCTGGTT
CCGCTCTACAACGGTGTACTCCTGCTGCTGGCGCTGGCCTACCTGAACATCCGCTTCCTGCTGCCCGCCACG
CTGGCCGGGCTGGCCGATGCCGGCGAGCAGCTCGCCGTACTTCGTGCTCGCCGCGGCAGCCTGTTGCTGTTC
GGCCTGCTGATACTGCTCCTGGCGCTGGTGCCGCTGCTCAACCTGCTGCTGCCGGCGGTGCTCGGCGGCGGT
ACCTGCCACCTGGCCAATCGCGGCCTGGCGCAACTGCGCGGCGAGGCCACGACAGAGAGTGGCAGCGCCGGC
TAG
Translation:
MERIRRWYRQSLAAATEAATCFALGFRESLQPAALFRSASLCILVSVLCTWLFVHFFEPIIRLCGWAALYTA
FSVANFALIPSGSLIEAGSGGPYFDPLAAFNGLAGLAQLAFYFVGYAALFFVALYAASIVFGIRLCLRIGLL
GQLKEQVRQRYPRLAPASGERISLWRAAGFRLAPWLGVSGSILVGLLVPLYNGVLLLLALAYLNIRFLLPAT
LAGLADAGEQLAVLRARRGSLLLFGLLILLLALVPLLNLLLPAVLGGGTCHLANRGLAQLRGEATTESGSAG
*
AnnotationID:2813GeneID:2805
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4849
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5613




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22756




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35187




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2805_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2805
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4548
                           PA4849_tr
                           translation of PA4849
                           288
                           99.30
                           99.30
                           0
                           1430.0
     

     
     
130926
                           gb|AAG08234.1|AE004898_5
                           (AE004898) hypothetical protein PA4849 [Pseudomonas aeruginosa PAO1]
                           288
                           99.30
                           99.30
                           0
                           1430.0
     

     






      

          
GC ORFID: 45807How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4849Glimmer Score: 

          
Start: 4978584Stop: 4979450

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4849 translation of PA4849Homolog Bit Score 555.0

          
Other Homologs:  t_PA4849 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACGCATCCGCCGCTGGTACCGCCAATCGCTGGCCGCCGCGACCGAGGCCGCGACCTGCTTCGCCCTG 
GGCTTCAGGGAAAGCCTGCAACCCGCCGCACTCTTCCGCTCCGCGAGCCTGTGCATTCTCGTCAGCGTGCTG 
TGCACCTGGCTGTTCGTGCATTTCTTCGAACCGATCATCCGCCTCTGCGGCTGGGCCGCGCTGTACACGGCA 
TTCAGCGTGGCCAACTTCGCCCTGATCCCCAGCGGCTCGCTGATCGAGGCCGGCAGCGGTGGCCCGTACTTC 
GATCCGCTGGCGGCCTTCAACGGCCTGGCAGGACTGGCGCAACTGGCGTTCTATTTCGTCGGCTATGCCGCG 
CTGTTCTTCGTCGCCCTGTACGCCGCCAGCATCGTCTTCGGCATCCGCCTGTGCCTGCGCATCGGCCTGCTC 
GGACAACTGAAGGAACAGGTCCGCCAACGCTACCCGCGACTGGCACCTGCCTCCGGCGAAAGGATCTCGCTG 
TGGCGTGCCGCCGGCTTCCGCCTGGCACCCTGGCTGGGCGTTTCCGGATCGATCCTGGTCGGCCTGCTGGTT 
CCGCTCTACAACGGTGTACTCCTGCTGCTGGCGCTGGCCTACCTGAACATCCGCTTCCTGCTGCCCGCCACG 
CTGGCCGGGCTGGCCGATGCCGGCGAGCAGCTCGCCGTACTTCGTGCTCGCCGCGGCAGCCTGTTGCTGTTC 
GGCCTGCTGATACTGCTCCTGGCGCTGGTGCCGCTGCTCAACCTGCTGCTGCCGGCGGTGCTCGGCGGCGGT 
ACCTGCCACCTGGCCAATCGCGGCCTGGCGCAACTGCGCGGCGAGGCCACGACAGAGAGTGGCAGCGCCGGC 
TAG