ViewGene
Locus Name:
GeneID:
Location:

GeneID:2804
TrivialName: PA14_62590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62590
PAO1 Ortholog Locus:PA4730
Sequence Length:852
Protein Length:283
Start: 5584191
Stop: 5585042
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08116.1|AE004886_8 (AE004886) pantoate--beta-alanine ligase [Pseudomonas aeruginosa PAO1]
Identities = 283/283 (100%), Positives = 283/283 (100%)
Sequence:
ATGAACACCGTCAAGACCGTCCGTGAACTGCGCGCCGCGGTGGCGCGCGCCCGCAGCGAAGGCAAGCGCATC
GGCTTCGTGCCGACCATGGGCAACCTCCACGCCGGCCATGCCGCGCTGGTAAAGAAAGCCGGCGAACGCGCC
GACTTCGTGGTCGTCAGCATCTTCGTCAACCCGCTGCAATTCGGCCCCAGCGAAGACCTCGACACATACCCG
CGAACCCTCGCAGCCGACCAGGAACGCCTGCTCGAAGCCGGCTGCCACCTGCTGTTCACCCCGACCGTCGAG
GAAATGTACCCCGACGGCATGGACGGGCAGACCCGCATCCATGTTCCCGGCGTCTCCGAAGGCCTTTGCGGC
GCCAGTCGTCCCGGCCATTTCGAAGGCGTGGCGACCGTGGTCAGCAAGCTGCTGAACATGGTCCAGCCGGAC
CTCGCGCTGTTCGGCGAAAAGGATTTCCAGCAGTTGGCGGTGATCCGCAAGCTGGTCCGCGACCTCAACCTG
CCGGTGCAGATCTTCGGCGAGCCGACGGTGCGCGCCGCCGATGGCCTGGCGTTGTCCTCGCGCAACGGTTAC
CTCGACGAGCAGCAGCGCGCCGCCGCCCCGGCGATCTACCGCACCCTGCGGCAGCTCGGCGAACGCATCCGC
GCCGGCGCCGAGGACTTCCCGGCATTGCTCGCCGACGCCCGCCAGGCCCTGGAACAGGCCGGGTTGCGCCCC
GACTACCTGGAAATCCGCGAGCCGATCAGCCTGCGCCCCGGGGTACCCGGCGACCGCCAACTGGTGATCCTG
GCCGCCGCCTACCTGGGCAGTACGCGGCTGATCGACAACCTCTCAGTCCACCTCGATTGA
Translation:
MNTVKTVRELRAAVARARSEGKRIGFVPTMGNLHAGHAALVKKAGERADFVVVSIFVNPLQFGPSEDLDTYP
RTLAADQERLLEAGCHLLFTPTVEEMYPDGMDGQTRIHVPGVSEGLCGASRPGHFEGVATVVSKLLNMVQPD
LALFGEKDFQQLAVIRKLVRDLNLPVQIFGEPTVRAADGLALSSRNGYLDEQQRAAAPAIYRTLRQLGERIR
AGAEDFPALLADARQALEQAGLRPDYLEIREPISLRPGVPGDRQLVILAAAYLGSTRLIDNLSVHLD*
AnnotationID:2812GeneID:2804
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 19:07:03
Gene Name:panC
Confidence Code:2
GeneProduct:pantoate--beta-alanine ligase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:pantothenate synthetase
Functional Category Confidence Code:5
COGs:pfam02569
Secondary Functional Category(ies):
EC Number:6.3.2.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70273.1|AE016667_6 (AE016791) pantoate--beta-alanine ligase [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  434 bits (1115), Expect = e-121
 Identities = 215/283 (75%), Positives = 243/283 (85%)

>gb|AAO60161.1| (AY210414) pantoate-beta-alanine ligase; PanC [Pseudomonas
           fluorescens]
          Length = 286

 Score =  429 bits (1103), Expect = e-120
 Identities = 214/283 (75%), Positives = 238/283 (84%)

>dbj|BAB33560.1| (AP002550) pantothenate synthetase [Escherichia coli O157:H7]
          Length = 283

 Score =  286 bits (731), Expect = 1e-76
 Identities = 148/282 (52%), Positives = 193/282 (68%)








 
Structural Features:
pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. 
Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) 
catalyses the formation of pantothenate from pantoate and alanine.
CD-Length = 282 residues, 100.0% aligned
Score =  318 bits (816), Expect = 6e-88
Identities = 149/282 (52%), Positives = 188/282 (66%), Gaps = 2/282 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5611




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22754




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37643




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2804_cdd.html


    		




 
URL:

















    ReferenceID:37737




  
Author/Investigator(s):
        Merkel WK, Nichols BP.





  
Title:
        Characterization and sequence of the Escherichia coli panBCD gene cluster.




  
PubMed:
        8837478


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1996 Oct 1;143(2-3):247-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8837478









           
Homologs By Global Alignment 

           

       



     
Gene ID:2804
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4547
                           PA4730_tr
                           translation of PA4730
                           283
                           99.99
                           99.99
                           0
                           1431.0
     

     
     
130832
                           gb|AAG08116.1|AE004886_8
                           (AE004886) pantoate--beta-alanine ligase [Pseudomonas aeruginosa PAO1]
                           283
                           99.99
                           99.99
                           0
                           1431.0
     

     
     
130835
                           gb|AAO54494.1|
                           (AE016859) pantoate--beta-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000]
                           285
                           75.08
                           82.45
                           4
                           1068.0
     

     
     
130833
                           gb|AAN70273.1|AE016667_6
                           (AE016791) pantoate--beta-alanine ligase [Pseudomonas putida KT2440]
                           287
                           74.91
                           84.66
                           4
                           1115.0
     

     
     
130834
                           gb|AAO60161.1|
                           (AY210414) pantoate-beta-alanine ligase; PanC [Pseudomonas fluorescens]
                           286
                           74.82
                           83.21
                           3
                           1103.0
     

     






      

          
GC ORFID: 45806How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4730Glimmer Score: 

          
Start: 4847871Stop: 4848722

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4730 translation of PA4730Homolog Bit Score 555.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2521 (ORF: BLASTX 415.0), t_PA4730 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACACCGTCAAGACCGTCCGTGAACTGCGCGCCGCGGTGGCGCGCGCCCGCAGCGAAGGCAAGCGCATC 
GGCTTCGTGCCGACCATGGGCAACCTCCACGCCGGCCATGCCGCGCTGGTAAAGAAAGCCGGCGAACGCGCC 
GACTTCGTGGTCGTCAGCATCTTCGTCAACCCGCTGCAATTCGGCCCCAGCGAAGACCTCGACACATACCCG 
CGAACCCTCGCAGCCGACCAGGAACGCCTGCTCGAAGCCGGCTGCCACCTGCTGTTCACCCCGACCGTCGAG 
GAAATGTACCCCGACGGCATGGACGGGCAGACCCGCATCCATGTTCCCGGCGTCTCCGAAGGCCTTTGCGGC 
GCCAGTCGTCCCGGCCATTTCGAAGGCGTGGCGACCGTGGTCAGCAAGCTGCTGAACATGGTCCAGCCGGAC 
CTCGCGCTGTTCGGCGAAAAGGATTTCCAGCAGTTGGCGGTGATCCGCAAGCTGGTCCGCGACCTCAACCTG 
CCGGTGCAGATCTTCGGCGAGCCGACGGTGCGCGCCGCCGATGGCCTGGCGTTGTCCTCGCGCAACGGTTAC 
CTCGACGAGCAGCAGCGCGCCGCCGCCCCGGCGATCTACCGCACCCTGCGGCAGCTCGGCGAACGCATCCGC 
GCCGGCGCCGAGGACTTCCCGGCATTGCTCGCCGACGCCCGCCAGGCCCTGGAACAGGCCGGGTTGCGCCCC 
GACTACCTGGAAATCCGCGAGCCGATCAGCCTGCGCCCCGGGGTACCCGGCGACCGCCAACTGGTGATCCTG 
GCCGCCGCCTACCTGGGCAGTACGCGGCTGATCGACAACCTCTCAGTCCACCTCGATTGA