ViewGene
Locus Name:
GeneID:
Location:

GeneID:2802
TrivialName: PA14_73250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73250
PAO1 Ortholog Locus:PA5555
Sequence Length:861
Protein Length:286
Start: 6523801
Stop: 6522941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08940.1|AE004967_11 (AE004967) ATP synthase gamma chain [Pseudomonas aeruginosa PAO1]
Identities = 286/286 (100%), Positives = 286/286 (100%)
Sequence:
ATGGCAGGCGCAAAAGAGATTCGCAGCAAGATTGCGAGCATCAAAAGCACGCAAAAGATCACCAATGCCATG
GAAAAAGTGGCGGTGAGCAAGATGCGCAAGGCACAAATGCGCATGGCGGCCGGCCGTCCCTACGCGGAGCGT
ATTCGCCAGGTGATCGGCCATCTGGCCAACGCCAACCCGGAATACCGTCACCCGTTCATGGTCGAGCGTGAA
GTCAAGCGCGTCGGCTACATCGTGGTGAGCAGTGACCGTGGTCTGTGCGGCGGTCTGAACATCAACCTGTTC
AAGTCCCTCGTCAAGGACATGAGCGGCTACCGCGAGCAAGGGGCGGAAATCGACCTTTGCGTGATCGGTAGC
AAGGGCGCTTCGTTCTTCCGCAGTTTCGGCGGCAACGTCGTGGCAGCTATCAGCCACCTCGGCGAAGAGCCT
TCGATCAACGACCTGATCGGCAGTGTCAAGGTGATGCTCGACGCATACCTCGAAGGCCGTATCGATCGCCTG
TTCGTGGTCTCCAACAAGTTCGTCAACACCATGACCCAGAAGCCGACCGTGGAACAGCTGATTCCGCTGGTG
GCCGATGACGATCAGGAGCTGAAGCACCACTGGGACTATCTCTACGAACCCGACGCCAAGTCGCTCCTCGAC
GGGCTGCTGGTGCGTTACGTGGAATCCCAGGTGTACCAGGCCGTGGTTGAGAACAACGCCTGTGAGCAGGCG
GCCCGGATGATTGCAATGAAGAACGCTACCGACAACGCCGGCGAGCTGATCAGCGATTTGCAGCTGATCTAC
AACAAGGCGCGTCAGGCGGCGATCACCCAGGAAATCTCGGAAATCGTCGGCGGCGCTGCCGCGGTGTAA
Translation:
MAGAKEIRSKIASIKSTQKITNAMEKVAVSKMRKAQMRMAAGRPYAERIRQVIGHLANANPEYRHPFMVERE
VKRVGYIVVSSDRGLCGGLNINLFKSLVKDMSGYREQGAEIDLCVIGSKGASFFRSFGGNVVAAISHLGEEP
SINDLIGSVKVMLDAYLEGRIDRLFVVSNKFVNTMTQKPTVEQLIPLVADDDQELKHHWDYLYEPDAKSLLD
GLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV*
AnnotationID:2810GeneID:2802
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:40
Gene Name:atpG
Confidence Code:2
GeneProduct:ATP synthase gamma chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F1, gamma subunit
Functional Category Confidence Code:5
COGs:COG0224,pfam00231
Secondary Functional Category(ies):
EC Number:3.6.3.14
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70978.1|AE016742_7 (AE016794) ATP synthase F1, gamma subunit [Pseudomonas putida
           KT2440]
          Length = 286

 Score =  512 bits (1319), Expect = e-145
 Identities = 261/286 (91%), Positives = 272/286 (95%)

>gb|AAO59013.1| (AE016876) ATP synthase F1, gamma subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 286

 Score =  506 bits (1304), Expect = e-143
 Identities = 258/286 (90%), Positives = 272/286 (95%)

>gb|AAN83091.1|AE016769_206 (AE016769) ATP synthase gamma chain [Escherichia coli CFT073]
          Length = 287

 Score =  401 bits (1031), Expect = e-111
 Identities = 199/287 (69%), Positives = 243/287 (84%), Gaps = 1/287 (0%)






 
Structural Features:
COG0224, AtpG, F0F1-type ATP synthase, gamma subunit 
[Energy production and conversion]
CD-Length = 287 residues,  99.7% aligned
Score =  371 bits (953), Expect = 6e-104
Identities = 161/286 (56%), Positives = 210/286 (73%), Gaps = 4/286 (1%)

pfam00231, ATP-synt, ATP synthase.
CD-Length = 288 residues, 100.0% aligned
Score =  348 bits (894), Expect = 5e-97
Identities = 147/288 (51%), Positives = 206/288 (71%), Gaps = 3/288 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22750




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33338




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2802_cdd.html


    		




 
URL:

















    ReferenceID:35558




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35577




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839

















    ReferenceID:35587




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236









           
Homologs By Global Alignment 

           

       



     
Gene ID:2802
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4545
                           PA5555_tr
                           translation of PA5555
                           286
                           99.99
                           99.99
                           0
                           1433.0
     

     
     
130700
                           gb|AAG08940.1|AE004967_11
                           (AE004967) ATP synthase gamma chain [Pseudomonas aeruginosa PAO1]
                           286
                           99.99
                           99.99
                           0
                           1433.0
     

     
     
130701
                           gb|AAN70978.1|AE016742_7
                           (AE016794) ATP synthase F1, gamma subunit [Pseudomonas putida KT2440]
                           286
                           91.25
                           95.10
                           0
                           1319.0
     

     
     
130702
                           gb|AAO59013.1|
                           (AE016876) ATP synthase F1, gamma subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           286
                           90.20
                           95.10
                           0
                           1304.0
     

     
     
130717
                           emb|CAA34180.1|
                           (X16050) unnamed protein product [Vibrio alginolyticus]
                           288
                           69.79
                           81.94
                           2
                           1023.0
     

     






      

          
GC ORFID: 45804How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5555Glimmer Score: 

          
Start: 5787490Stop: 5786630

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5555 translation of PA5555Homolog Bit Score 556.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4131 (ORF: BLASTX 510.0), t_PA5555 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGGCGCAAAAGAGATTCGCAGCAAGATTGCGAGCATCAAAAGCACGCAAAAGATCACCAATGCCATG 
GAAAAAGTGGCGGTGAGCAAGATGCGCAAGGCACAAATGCGCATGGCGGCCGGCCGTCCCTACGCGGAGCGT 
ATTCGCCAGGTGATCGGCCATCTGGCCAACGCCAACCCGGAATACCGTCACCCGTTCATGGTCGAGCGTGAA 
GTCAAGCGCGTCGGCTACATCGTGGTGAGCAGTGACCGTGGTCTGTGCGGCGGTCTGAACATCAACCTGTTC 
AAGTCCCTCGTCAAGGACATGAGCGGCTACCGCGAGCAAGGGGCGGAAATCGACCTTTGCGTGATCGGTAGC 
AAGGGCGCTTCGTTCTTCCGCAGTTTCGGCGGCAACGTCGTGGCAGCTATCAGCCACCTCGGCGAAGAGCCT 
TCGATCAACGACCTGATCGGCAGTGTCAAGGTGATGCTCGACGCATACCTCGAAGGCCGTATCGATCGCCTG 
TTCGTGGTCTCCAACAAGTTCGTCAACACCATGACCCAGAAGCCGACCGTGGAACAGCTGATTCCGCTGGTG 
GCCGATGACGATCAGGAGCTGAAGCACCACTGGGACTATCTCTACGAACCCGACGCCAAGTCGCTCCTCGAC 
GGGCTGCTGGTGCGTTACGTGGAATCCCAGGTGTACCAGGCCGTGGTTGAGAACAACGCCTGTGAGCAGGCG 
GCCCGGATGATTGCAATGAAGAACGCTACCGACAACGCCGGCGAGCTGATCAGCGATTTGCAGCTGATCTAC 
AACAAGGCGCGTCAGGCGGCGATCACCCAGGAAATCTCGGAAATCGTCGGCGGCGCTGCCGCGGTGTAA