ViewGene
Locus Name:
GeneID:
Location:

GeneID:2801
TrivialName: PA14_72930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72930
PAO1 Ortholog Locus:PA5528
Sequence Length:858
Protein Length:285
Start: 6493975
Stop: 6493118
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08913.1|AE004965_5 (AE004965) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/285 (99%), Positives = 283/285 (99%), Gaps = 1/285 (0%)
Sequence:
ATGCAGCGTGTTCTCAGCATCGCCCTCGCCTTCTGCCTGGCGCTGACCGTCAGCCTGGATGCCAATGCCAAG
CGCTTCGGCGGCGGCAAGAGCCTCGGCTCGGCACCCAGCCACCAGACCCGCCAGGCGCAGCCGGCCACTGCG
CCGAACGCCACTGCTGCCGCCCCCAACGCCGCCCGTCCCGCCGCTGCCGCCAGCGGTGCTTCGCGCTGGCTC
GGCCCGCTGGCCGGTATCGCCGCCGGCGGCCTGCTCGCCTCCATGTTCATGGGCGACGGCTTCGAAGGCATC
CAGATGCTCGATATCCTGTTGATCGCCCTGGTGGCCTTCATTGCCTTCCGCTTCATCGCCGCTCGCCGACGC
CAGCAGAACCAGGGGCAGCCGGCGATGGCCGGGCACGCGCCGATGCAGCGCGAAATGCCGGCCCAGGCGCCG
ATCTTCGGTGGCGCCACCGCCGCTGCCGCCGTTGCGCCGAGCCCGGTGATCAACGCGCCGAGCTGGTTCAAC
GAGGAGCGCTTCGTCGGTGCCGCTCGCGAACACTTCATGTCCCTGCAGCAGCATTGGGATGCCAACGAGATG
GACAAGATCGCCGAGTTCGTCACCCCGCAGATGTTGCAATGGCTGAAGCAGGAGCGCGCCGAGATCGGCGAC
GCCTACCAGTCCACCTACATCGACAATCTGGTCGTGCAACTGGACGGCGTCGACGACCAGGCCGACAAGACC
ATCGCCACCCTGACCTTCAGCGGTGTGTCGAAGACCTCGCGCTTCGACCAGGGCGAAGCCTTCAGCGAAAGC
TGGCGGATGGAGCGCGCCCAGGGCGAGAACCAGCCATGGCTGGTGGCCGGTATCCGGCAGAACTGA
Translation:
MQRVLSIALAFCLALTVSLDANAKRFGGGKSLGSAPSHQTRQAQPATAPNATAAAPNAARPAAAASGASRWL
GPLAGIAAGGLLASMFMGDGFEGIQMLDILLIALVAFIAFRFIAARRRQQNQGQPAMAGHAPMQREMPAQAP
IFGGATAAAAVAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEFVTPQMLQWLKQERAEIGD
AYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRFDQGEAFSESWRMERAQGENQPWLVAGIRQN*
AnnotationID:2809GeneID:2801
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5528
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5605




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22748




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33246




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2801_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2801
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4544
                           PA5528_tr
                           translation of PA5528
                           285
                           99.29
                           99.29
                           1
                           1436.0
     

     
     
130697
                           gb|AAG08913.1|AE004965_5
                           (AE004965) hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1]
                           285
                           99.29
                           99.29
                           1
                           1436.0
     

     
     
130699
                           gb|AAO58936.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           75.77
                           84.77
                           13
                           1092.0
     

     
     
130698
                           gb|AAN70918.1|AE016736_1
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           290
                           75.51
                           83.44
                           11
                           1094.0
     

     






      

          
GC ORFID: 45803How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5528Glimmer Score: 

          
Start: 5757664Stop: 5756807

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5528 translation of PA5528Homolog Bit Score 556.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2919 (ORF: BLASTX 422.0), t_PA5528 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCGTGTTCTCAGCATCGCCCTCGCCTTCTGCCTGGCGCTGACCGTCAGCCTGGATGCCAATGCCAAG 
CGCTTCGGCGGCGGCAAGAGCCTCGGCTCGGCACCCAGCCACCAGACCCGCCAGGCGCAGCCGGCCACTGCG 
CCGAACGCCACTGCTGCCGCCCCCAACGCCGCCCGTCCCGCCGCTGCCGCCAGCGGTGCTTCGCGCTGGCTC 
GGCCCGCTGGCCGGTATCGCCGCCGGCGGCCTGCTCGCCTCCATGTTCATGGGCGACGGCTTCGAAGGCATC 
CAGATGCTCGATATCCTGTTGATCGCCCTGGTGGCCTTCATTGCCTTCCGCTTCATCGCCGCTCGCCGACGC 
CAGCAGAACCAGGGGCAGCCGGCGATGGCCGGGCACGCGCCGATGCAGCGCGAAATGCCGGCCCAGGCGCCG 
ATCTTCGGTGGCGCCACCGCCGCTGCCGCCGTTGCGCCGAGCCCGGTGATCAACGCGCCGAGCTGGTTCAAC 
GAGGAGCGCTTCGTCGGTGCCGCTCGCGAACACTTCATGTCCCTGCAGCAGCATTGGGATGCCAACGAGATG 
GACAAGATCGCCGAGTTCGTCACCCCGCAGATGTTGCAATGGCTGAAGCAGGAGCGCGCCGAGATCGGCGAC 
GCCTACCAGTCCACCTACATCGACAATCTGGTCGTGCAACTGGACGGCGTCGACGACCAGGCCGACAAGACC 
ATCGCCACCCTGACCTTCAGCGGTGTGTCGAAGACCTCGCGCTTCGACCAGGGCGAAGCCTTCAGCGAAAGC 
TGGCGGATGGAGCGCGCCCAGGGCGAGAACCAGCCATGGCTGGTGGCCGGTATCCGGCAGAACTGA