ViewGene
Locus Name:
GeneID:
Location:

GeneID:2800
TrivialName: PA14_64850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64850
PAO1 Ortholog Locus:PA4908
Sequence Length:894
Protein Length:297
Start: 5779266
Stop: 5778373
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08293.1|AE004904_1 (AE004904) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/310 (93%), Positives = 292/310 (94%), Gaps = 13/310 (4%)
Sequence:
ATGCACAGCCTGCGCTTTTTCAGCAACGCCGAGGTCGCCGAGCGCCTGTCTTATCCACAACTGATCGAGGCG
TTGCGCATCGGCCTGGCCAAGCCTTGCAGTGCGCCGCTGCGCAGCTGCCATGCCTTGCCGGGGCAGGCCTCG
TTGCTACAGATGCCGGTGTGGCAGGCCGGCGAGGGGATCGGCGTGAAACTGGTGACGGTGTTCCCCGGCAAC
GGCGCGCGTGGCCTACCGGCGGTGGCCGCGGTGTTCGCCCTGTTCGACGGCGAAGACGGTCGCCCGCTGGCG
TTGCTGGAGGCTTCGGAACTGACCGCCCGGCGTACCGCCTGCAGCTCGGCGCTGGCCGCCGACTACCTGGCG
CGGGACGATGCGCGGCGCCTGCTGGTGGTCGGCTGCGGAACCCTGGCTGCGCACATGGTGCGGGCCCACGCC
TGCGTGCGCGACTATCGCCACATCGACATCTGGGGCCGCGATCCGGCCAAGGCCGCCGCGCTGGCCGCCCGG
CTGCGCGCGGCGGTGGAGGCGGCCGACTGCGTCAGTTGCGTTACCACCTCCCGCGAAGCGCTGGTGCGCGGC
GCATGGCTGAAGCCGGGCGTCCATCTCGACCTGGTTGGCGCCTTCCTGCCGTCCATGCGCGAGACCGACGCC
CTGGCGGTGGCGCGCGCGCGGATCGTGGTGGACACCCGCGCAGGCGCGCTGGAAGAAGCCGGCGACCTGTTG
CAGGCGATCGCCGAAGGCGCCATCGGGCACGAGGCGATATCCACCGAACTGCGCGACTTGCTGGGCGGGGCT
GGGCGGCGCGGCGATCCCGGGGAAATCACCCTGTTCAAGTCGGTGGGTTATGCGCTGGAGGACCTGGTCGCC
GCGCGCCGGGTTGTGGATAACGCCGCCTGA
Translation:
MHSLRFFSNAEVAERLSYPQLIEALRIGLAKPCSAPLRSCHALPGQASLLQMPVWQAGEGIGVKLVTVFPGN
GARGLPAVAAVFALFDGEDGRPLALLEASELTARRTACSSALAADYLARDDARRLLVVGCGTLAAHMVRAHA
CVRDYRHIDIWGRDPAKAAALAARLRAAVEAADCVSCVTTSREALVRGAWLKPGVHLDLVGAFLPSMRETDA
LAVARARIVVDTRAGALEEAGDLLQAIAEGAIGHEAISTELRDLLGGAGRRGDPGEITLFKSVGYALEDLVA
ARRVVDNAA*
AnnotationID:2808GeneID:2800
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:00
Gene Name:
Confidence Code:3
GeneProduct:putative ornithine cyclodeaminase
Cell Localization:()
Synonyms:PA4908
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2423,pfam02423
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB50148.1| (AP003001) ornithine cyclodeaminase; Ocd2 [Mesorhizobium loti]
          Length = 321

 Score =  242 bits (618), Expect = 2e-63
 Identities = 146/307 (47%), Positives = 184/307 (59%), Gaps = 26/307 (8%)

>emb|CAE31511.1| (BX640440) putative ornithine cyclodeaminase [Bordetella
           bronchiseptica]
          Length = 310

 Score =  233 bits (595), Expect = 8e-61
 Identities = 138/312 (44%), Positives = 182/312 (58%), Gaps = 21/312 (6%)






 
Structural Features:
COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog 
[Amino acid transport and metabolism]
CD-Length = 330 residues,  96.4% aligned
Score =  255 bits (653), Expect = 4e-69
Identities = 127/319 (39%), Positives = 168/319 (52%), Gaps = 24/319 (7%)

pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin family.
CD-Length = 313 residues,  86.3% aligned
Score =  160 bits (406), Expect = 2e-40
Identities = 104/278 (37%), Positives = 140/278 (50%), Gaps = 25/278 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22746




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35147




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2800_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2800
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4543
                           PA4908_tr
                           translation of PA4908
                           310
                           93.22
                           94.19
                           13
                           1442.0
     

     
     
130691
                           gb|AAG08293.1|AE004904_1
                           (AE004904) hypothetical protein PA4908 [Pseudomonas aeruginosa PAO1]
                           310
                           93.22
                           94.19
                           13
                           1442.0
     

     
     
130692
                           dbj|BAB50148.1|
                           (AP003001) ornithine cyclodeaminase; Ocd2 [Mesorhizobium loti]
                           324
                           45.37
                           57.40
                           30
                           630.0
     

     
     
130693
                           emb|CAE31511.1|
                           (BX640440) putative ornithine cyclodeaminase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           316
                           43.67
                           57.59
                           25
                           613.0
     

     
     
130694
                           emb|CAE41794.1|
                           (BX640415) putative ornithine cyclodeaminase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           322
                           40.99
                           52.17
                           31
                           535.0
     

     






      

          
GC ORFID: 45802How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4908Glimmer Score: 

          
Start: 5042947Stop: 5042054

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4908 translation of PA4908Homolog Bit Score 556.0

          
Other Homologs:  t_PA4908 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAGCCTGCGCTTTTTCAGCAACGCCGAGGTCGCCGAGCGCCTGTCTTATCCACAACTGATCGAGGCG 
TTGCGCATCGGCCTGGCCAAGCCTTGCAGTGCGCCGCTGCGCAGCTGCCATGCCTTGCCGGGGCAGGCCTCG 
TTGCTACAGATGCCGGTGTGGCAGGCCGGCGAGGGGATCGGCGTGAAACTGGTGACGGTGTTCCCCGGCAAC 
GGCGCGCGTGGCCTACCGGCGGTGGCCGCGGTGTTCGCCCTGTTCGACGGCGAAGACGGTCGCCCGCTGGCG 
TTGCTGGAGGCTTCGGAACTGACCGCCCGGCGTACCGCCTGCAGCTCGGCGCTGGCCGCCGACTACCTGGCG 
CGGGACGATGCGCGGCGCCTGCTGGTGGTCGGCTGCGGAACCCTGGCTGCGCACATGGTGCGGGCCCACGCC 
TGCGTGCGCGACTATCGCCACATCGACATCTGGGGCCGCGATCCGGCCAAGGCCGCCGCGCTGGCCGCCCGG 
CTGCGCGCGGCGGTGGAGGCGGCCGACTGCGTCAGTTGCGTTACCACCTCCCGCGAAGCGCTGGTGCGCGGC 
GCATGGCTGAAGCCGGGCGTCCATCTCGACCTGGTTGGCGCCTTCCTGCCGTCCATGCGCGAGACCGACGCC 
CTGGCGGTGGCGCGCGCGCGGATCGTGGTGGACACCCGCGCAGGCGCGCTGGAAGAAGCCGGCGACCTGTTG 
CAGGCGATCGCCGAAGGCGCCATCGGGCACGAGGCGATATCCACCGAACTGCGCGACTTGCTGGGCGGGGCT 
GGGCGGCGCGGCGATCCCGGGGAAATCACCCTGTTCAAGTCGGTGGGTTATGCGCTGGAGGACCTGGTCGCC 
GCGCGCCGGGTTGTGGATAACGCCGCCTGA