ViewGene

Locus Name:
GeneID:
Location:

GeneID:2797
TrivialName: PA14_27850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27850
PAO1 Ortholog Locus:PA2806
Sequence Length:831
Protein Length:276
Start: 2412777
Stop: 2413607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06194.1|AE004707_13 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 275/276 (99%), Positives = 275/276 (99%)
Sequence:
ATGCAGCATCCCGCCGAACATTCGCCGCTGGGCAAGACCAGCGAATACGTCTCCAGCTACACGCCGTCGCTG
CTGTTTCCCATTTCACGCACGGCGAAATGGGCCGAGCTTGGCCTGAGCGCCGAGACCCTGCCTTATCGCGGC
GTGGATATCTGGAACTGCTACGAGCTGTCCTGGCTGACCCCGGCCGGCAAGCCGGTGGTGGCGATCGGCGAG
TTCTCGATCCCGGCGGACTCGCCGAACATCATCGAGTCGAAGTCGTTCAAGCTTTACCTCAATTCCCTCAAC
CAGTCCGCCTTCGATAGTCGTGAGGCGCTTCGCGCGGTATTGCAGAAAGACCTCTCGGCCGCTGCCGGGGCG
CCCGTGGGCGTGCGCCTGCGCAGCCTCGACGAGGTTGCCGAGGAGGGCATCGGGCGTCTGCCGGGGCGCTGC
ATCGACGAGCTGGACATCGCCGTCGACGGCTACGAGCAGCCGCGCCCGGAACTGCTGCGCTGCGACGCCGGG
CGGATCGTCGAGGAGCAGCTCTACAGCCACCTGCTCAAGTCCAACTGCCCGGTCACCGGCCAGCCCGACTGG
GGCACCCTGGTGGTCGACTACCGGGGCCCGGCGCTGGACCCGGCCAGCCTGCTGGCCTACCTGGTTTCCTTC
CGCCAGCACCAGGACTTCCACGAACAGTGCGTCGAACGCATCTTCCTCGACCTGCAGCGCCTGTTGCAGCCG
CAGGCGCTCAGCGTCTACGCGCGCTACGTACGCCGTGGCGGCCTGGATATCAATCCCTACCGCAGCCTGGCG
GAGGTCGCACCGGACAACCGACGCCTGGTGCGCCAGTAA
Translation:
MQHPAEHSPLGKTSEYVSSYTPSLLFPISRTAKWAELGLSAETLPYRGVDIWNCYELSWLTPAGKPVVAIGE
FSIPADSPNIIESKSFKLYLNSLNQSAFDSREALRAVLQKDLSAAAGAPVGVRLRSLDEVAEEGIGRLPGRC
IDELDIAVDGYEQPRPELLRCDAGRIVEEQLYSHLLKSNCPVTGQPDWGTLVVDYRGPALDPASLLAYLVSF
RQHQDFHEQCVERIFLDLQRLLQPQALSVYARYVRRGGLDINPYRSLAEVAPDNRRLVRQ*
AnnotationID:2805GeneID:2797
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 06:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative GTP cyclohydrolase
Cell Localization:()
Synonyms:folE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0780
Secondary Functional Category(ies):central intermediary metabolism
EC Number:3.5.4.16
Status:ACTIVE
Pathway:
Folate biosynthesis;
Tetrahydrofolate biosynthesis; first step
Homology:
>gb|AAO55629.1| (AE016863) GTP cyclohydrolase I, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 276

 Score =  436 bits (1120), Expect = e-122
 Identities = 209/275 (76%), Positives = 240/275 (87%), Gaps = 1/275 (0%)

>gb|AAN81807.1|AE016765_209 (AE016765) Hypothetical protein yqcD [Escherichia coli CFT073]
          Length = 282

 Score =  278 bits (710), Expect = 3e-74
 Identities = 142/268 (52%), Positives = 176/268 (65%), Gaps = 1/268 (0%)
Structural Features:
COG0780, Enzyme related to GTP cyclohydrolase I
CD-Length = 149 residues, 100.0% aligned
Score =  168 bits (428), Expect = 5e-43
Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Genomic Context:
Comment:
ReferenceID:5597
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22741
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36255
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2797_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2797

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4540 PA2806_tr translation of PA2806 276 99.63 99.63 0 1432.0
130603 gb|AAG06194.1|AE004707_13 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 276 99.63 99.63 0 1432.0
130604 gb|AAO55629.1| (AE016863) GTP cyclohydrolase I, putative [Pseudomonas syringae pv. tomato str. DC3000] 277 75.45 86.64 2 1122.0
130605 gb|AAN67773.1|AE016408_11 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 277 72.92 87.00 2 1102.0
130606 gb|AAQ61412.1| (AE016923) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 280 57.85 67.50 5 791.0
GC ORFID: 45799How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2806Glimmer Score:
Start: 2541149Stop: 2540319
Length: 831
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2806 translation of PA2806Homolog Bit Score 556.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene901 (ORF: BLASTX 438.0), t_PA2806 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGCATCCCGCCGAACATTCGCCGCTGGGCAAGACCAGCGAATACGTCTCCAGCTACACGCCGTCGCTG
CTGTTTCCCATTTCACGCACGGCGAAATGGGCCGAGCTTGGCCTGAGCGCCGAGACCCTGCCTTATCGCGGC
GTGGATATCTGGAACTGCTACGAGCTGTCCTGGCTGACCCCGGCCGGCAAGCCGGTGGTGGCGATCGGCGAG
TTCTCGATCCCGGCGGACTCGCCGAACATCATCGAGTCGAAGTCGTTCAAGCTTTACCTCAATTCCCTCAAC
CAGTCCGCCTTCGATAGTCGTGAGGCGCTTCGCGCGGTATTGCAGAAAGACCTCTCGGCCGCTGCCGGGGCG
CCCGTGGGCGTGCGCCTGCGCAGCCTCGACGAGGTTGCCGAGGAGGGCATCGGGCGTCTGCCGGGGCGCTGC
ATCGACGAGCTGGACATCGCCGTCGACGGCTACGAGCAGCCGCGCCCGGAACTGCTGCGCTGCGACGCCGGG
CGGATCGTCGAGGAGCAGCTCTACAGCCACCTGCTCAAGTCCAACTGCCCGGTCACCGGCCAGCCCGACTGG
GGCACCCTGGTGGTCGACTACCGGGGCCCGGCGCTGGACCCGGCCAGCCTGCTGGCCTACCTGGTTTCCTTC
CGCCAGCACCAGGACTTCCACGAACAGTGCGTCGAACGCATCTTCCTCGACCTGCAGCGCCTGTTGCAGCCG
CAGGCGCTCAGCGTCTACGCGCGCTACGTACGCCGTGGCGGCCTGGATATCAATCCCTACCGCAGCCTGGCG
GAGGTCGCACCGGACAACCGACGCCTGGTGCGCCAGTAA