ViewGene

Locus Name:
GeneID:
Location:

GeneID:2796
TrivialName: PA14_44760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44760
PAO1 Ortholog Locus:PA1522
Sequence Length:840
Protein Length:279
Start: 3989362
Stop: 3990201
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04911.1|AE004580_11 (AE004580) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 279/279 (100%), Positives = 279/279 (100%)
Sequence:
ATGAACTGGATCAGCGCCCTGGCCGAGTTGCAGCGTAGCGGCGAACCTTGCGTCCTGGTGACCATCATCGAG
GAGCGCGGCTCGACCCCGCGCAACGCCGGCTCGAAGATGGTGGTCAGCGCCGAGCGGCTCTACGACACCATC
GGCGGCGGCCACCTGGAATACAGGGCCCAGGCCATTGCCCGGGAAATGCTCGCCGCGCGGACCCAGGACACC
CGCCTGGAGCGCTTCAGCCTGGGCGCCAGTCTCGGCCAGTGCTGCGGCGGCGCCACGGTGCTGCTGTTCGAG
CCGATGGGCCAGCCACAGGCACACATCGCCGTGTTCGGCGCGGGCCACGTCGGTCGCGCCCTGGTACCCTTG
CTCGCCAGCCTGCCCTGCCGGGTGCGCTGGATCGATTCGCGGGAACACGAATTTCCCGCGCTCCTGCCCGAC
GGCGTGGAGAAAGTGGTGAACGACGAAGTGCTCGACGAGGTCGAGCGGATGCCGCCCGGCAGCCACTTCATC
GTCATGACCCACAACCACCCGCTGGACCTGGAGCTTACCGCGGCGATCCTGGCGCGCAACGACTTCGCCTAC
TTCGGCCTGATCGGCTCGAAGACCAAGCGCGTCAAGTTCGAGCACCGCCTGCGCGAACGTGGCGTCGATGCC
GAACGCCTGCAACGGATGCGCTGCCCGATGGGCCTGGAGCAGGTGAAAGGCAAGCTGCCGGCGGAGATCGCC
ATCTCCATCGCCGGCGAGGTGATCGCCACCTACAACGCCGCCTTCGGCCTGGAACGCAAGCAGGGGCCGTCG
AGCGTCACCCGGCTGACCCCGGAGTCGCGCCGCGCCCACGAATCCTGA
Translation:
MNWISALAELQRSGEPCVLVTIIEERGSTPRNAGSKMVVSAERLYDTIGGGHLEYRAQAIAREMLAARTQDT
RLERFSLGASLGQCCGGATVLLFEPMGQPQAHIAVFGAGHVGRALVPLLASLPCRVRWIDSREHEFPALLPD
GVEKVVNDEVLDEVERMPPGSHFIVMTHNHPLDLELTAAILARNDFAYFGLIGSKTKRVKFEHRLRERGVDA
ERLQRMRCPMGLEQVKGKLPAEIAISIAGEVIATYNAAFGLERKQGPSSVTRLTPESRRAHES*
AnnotationID:2804GeneID:2796
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:putative xanthine dehydrogenase accessory factor X
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1975
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Identities = 206/278 (74%), Positives = 232/278 (83%), Gaps = 1/278 (0%) to
COG1975: Xanthine and CO dehydrogenases maturation factor,
XdhC/CoxF family [Pseudomonas fluorescens PfO-1]
Structural Features:
Genomic Context:
Comment:
ReferenceID:5595
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17013
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1522_CDS.cgi
URL:
ReferenceID:22739
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2796

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4539 PA1522_tr translation of PA1522 279 99.99 99.99 0 1432.0
130600 gb|AAG04911.1|AE004580_11 (AE004580) hypothetical protein PA1522 [Pseudomonas aeruginosa PAO1] 279 99.99 99.99 0 1432.0
130602 gb|AAN69860.1|AE016625_3 (AE016790) xanthine dehydrogenase accessory factor XdhC, putative [Pseudomonas putida KT2440] 283 72.43 80.21 6 1025.0
130601 gb|AAO57131.1| (AE016869) xanthine dehydrogenase accessory factor XdhC, putative [Pseudomonas syringae pv. tomato str. DC3000] 292 71.23 79.10 14 1069.0
GC ORFID: 45798How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1522Glimmer Score:
Start: 964547Stop: 963708
Length: 840
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1522 translation of PA1522Homolog Bit Score 556.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene584 (ORF: BLASTX 414.0), t_PA1522 (ORF: GLIMMER)
GC ORF Sequence
ATGAACTGGATCAGCGCCCTGGCCGAGTTGCAGCGTAGCGGCGAACCTTGCGTCCTGGTGACCATCATCGAG
GAGCGCGGCTCGACCCCGCGCAACGCCGGCTCGAAGATGGTGGTCAGCGCCGAGCGGCTCTACGACACCATC
GGCGGCGGCCACCTGGAATACAGGGCCCAGGCCATTGCCCGGGAAATGCTCGCCGCGCGGACCCAGGACACC
CGCCTGGAGCGCTTCAGCCTGGGCGCCAGTCTCGGCCAGTGCTGCGGCGGCGCCACGGTGCTGCTGTTCGAG
CCGATGGGCCAGCCACAGGCACACATCGCCGTGTTCGGCGCGGGCCACGTCGGTCGCGCCCTGGTACCCTTG
CTCGCCAGCCTGCCCTGCCGGGTGCGCTGGATCGATTCGCGGGAACACGAATTTCCCGCGCTCCTGCCCGAC
GGCGTGGAGAAAGTGGTGAACGACGAAGTGCTCGACGAGGTCGAGCGGATGCCGCCCGGCAGCCACTTCATC
GTCATGACCCACAACCACCCGCTGGACCTGGAGCTTACCGCGGCGATCCTGGCGCGCAACGACTTCGCCTAC
TTCGGCCTGATCGGCTCGAAGACCAAGCGCGTCAAGTTCGAGCACCGCCTGCGCGAACGTGGCGTCGATGCC
GAACGCCTGCAACGGATGCGCTGCCCGATGGGCCTGGAGCAGGTGAAAGGCAAGCTGCCGGCGGAGATCGCC
ATCTCCATCGCCGGCGAGGTGATCGCCACCTACAACGCCGCCTTCGGCCTGGAACGCAAGCAGGGGCCGTCG
AGCGTCACCCGGCTGACCCCGGAGTCGCGCCGCGCCCACGAATCCTGA