ViewGene

Locus Name:
GeneID:
Location:

GeneID:2794
TrivialName: PA14_65040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65040
PAO1 Ortholog Locus:PA4925
Sequence Length:852
Protein Length:283
Start: 5796088
Stop: 5795237
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08310.1|AE004905_8 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/283 (99%), Positives = 282/283 (99%)
Sequence:
ATGGATGACACGACGATCGTCAACGTAGGTACCGAGAAGATCAACGCGCTCTGGGCGACGGTGTCCCAGTAC
GCCTTCGCCTTCGGCATCAAGATTCTCGCGGCCATCGCCTTCTGGATGATCGGCCGCTGGCTGATCGGCTTC
GCCGTCGGCATGGTGCAGAAATCCCTCGAGCGGCAAAAGGTCGATCCCACCGTGCTGCGCTACGTGGGTTCG
TTCATCACGGTGACCCTGAACGTGCTGCTGGTGGTGGGCATCCTCGGTTTCTTCGGCATCCAGACCACCAGC
CTGGCGGCGCTGATCGCGGCGGTCGGCCTGGCCATCGGCATGGCCTGGTCGGGATTGCTGGCGAACCTGGCG
GCCGGCGGTTTCATCATCGTCCTGCGGCCGTTCAAGGTCGGCGACTTCATCTGCGCCGGCGGAGTGGCCGGC
ACGGTGAAGGAGATCGGCCTGTTCACCACGGCGATCAACACTCCGGACAACGTGCTGACCATGGTCGGCAAC
AACAAGATATTCGGCGACAACATCCAGAACTTCACCCACAACCCGTTCCGCCGGGTCGAGTTGAAGGCGCAG
CTTTCCGGTGCCGCCGACTACCAGGCGGCCATCGCCCTGCTCAAGCAGCGTGTCGCGGCGATTCCCAACGTG
CTCGGCGAGCCGCCGGTGGACGTGGAGATCCTCGAGTTCAACCTGGTCGGGCCGGTGCTGGCGGTGCGCCCG
TATTGCCACAACGACCATTACTGGCAGGTCTATTTCGATACCAACAAGGTGATCAAGGACGCCCTCGGCGCC
GACTTCCCGGCACCGATGCCGGCGCAGACGGTGATCGTGCAGCAGTCCGCCGGTGCCTGA
Translation:
MDDTTIVNVGTEKINALWATVSQYAFAFGIKILAAIAFWMIGRWLIGFAVGMVQKSLERQKVDPTVLRYVGS
FITVTLNVLLVVGILGFFGIQTTSLAALIAAVGLAIGMAWSGLLANLAAGGFIIVLRPFKVGDFICAGGVAG
TVKEIGLFTTAINTPDNVLTMVGNNKIFGDNIQNFTHNPFRRVELKAQLSGAADYQAAIALLKQRVAAIPNV
LGEPPVDVEILEFNLVGPVLAVRPYCHNDHYWQVYFDTNKVIKDALGADFPAPMPAQTVIVQQSAGA*
AnnotationID:2802GeneID:2794
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:55
Gene Name:
Confidence Code:3
GeneProduct:putative mechanosensitive ion channel family protein
Cell Localization:()
Synonyms:PA4925
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative transmembrane transport protein
Functional Category Confidence Code:5
COGs:COG0668,pfam00924
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD16369.1| (AL646071) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 298

 Score =  400 bits (1028), Expect = e-111
 Identities = 199/264 (75%), Positives = 227/264 (85%), Gaps = 1/264 (0%)

Structural Features:
COG0668, MscS, Small-conductance mechanosensitive channel 
[Cell envelope biogenesis, outer membrane]
CD-Length = 316 residues,  91.1% aligned
Score =  148 bits (373), Expect = 8e-37
Identities = 91/288 (31%), Positives = 156/288 (54%), Gaps = 10/288 (3%)

pfam00924, MS_channel, Mechanosensitive ion channel. 
CD-Length = 205 residues,  97.1% aligned
Score =  120 bits (302), Expect = 2e-28
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%)
Genomic Context:
Comment:
ReferenceID:5591
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22735
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35144
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2794_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2794

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4537 PA4925_tr translation of PA4925 283 99.29 99.64 0 1436.0
130579 gb|AAG08310.1|AE004905_8 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 283 99.29 99.64 0 1436.0
130580 emb|CAD16369.1| (AL646071) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 303 67.32 77.55 25 1029.0
130581 gb|AAR34931.1| (AE017212) mechanosensitive ion channel family protein [Geobacter sulfurreducens PCA] 284 61.97 76.76 11 942.0
130582 dbj|BAC88878.1| (AP006571) gll0937 [Gloeobacter violaceus PCC 7421] 283 56.89 73.14 14 850.0
GC ORFID: 45796How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4925Glimmer Score:
Start: 5059769Stop: 5058918
Length: 852
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4925 translation of PA4925Homolog Bit Score 557.0
Other Homologs: psyr_15may02_Scaffold18_revised_gene2857 (ORF: BLASTX 306.0), t_PA4925 (ORF: GLIMMER)
GC ORF Sequence
ATGGATGACACGACGATCGTCAACGTAGGTACCGAGAAGATCAACGCGCTCTGGGCGACGGTGTCCCAGTAC
GCCTTCGCCTTCGGCATCAAGATTCTCGCGGCCATCGCCTTCTGGATGATCGGCCGCTGGCTGATCGGCTTC
GCCGTCGGCATGGTGCAGAAATCCCTCGAGCGGCAAAAGGTCGATCCCACCGTGCTGCGCTACGTGGGTTCG
TTCATCACGGTGACCCTGAACGTGCTGCTGGTGGTGGGCATCCTCGGTTTCTTCGGCATCCAGACCACCAGC
CTGGCGGCGCTGATCGCGGCGGTCGGCCTGGCCATCGGCATGGCCTGGTCGGGATTGCTGGCGAACCTGGCG
GCCGGCGGTTTCATCATCGTCCTGCGGCCGTTCAAGGTCGGCGACTTCATCTGCGCCGGCGGAGTGGCCGGC
ACGGTGAAGGAGATCGGCCTGTTCACCACGGCGATCAACACTCCGGACAACGTGCTGACCATGGTCGGCAAC
AACAAGATATTCGGCGACAACATCCAGAACTTCACCCACAACCCGTTCCGCCGGGTCGAGTTGAAGGCGCAG
CTTTCCGGTGCCGCCGACTACCAGGCGGCCATCGCCCTGCTCAAGCAGCGTGTCGCGGCGATTCCCAACGTG
CTCGGCGAGCCGCCGGTGGACGTGGAGATCCTCGAGTTCAACCTGGTCGGGCCGGTGCTGGCGGTGCGCCCG
TATTGCCACAACGACCATTACTGGCAGGTCTATTTCGATACCAACAAGGTGATCAAGGACGCCCTCGGCGCC
GACTTCCCGGCACCGATGCCGGCGCAGACGGTGATCGTGCAGCAGTCCGCCGGTGCCTGA