ViewGene
Locus Name:
GeneID:
Location:

GeneID:2793
TrivialName: PA14_14380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14380
PAO1 Ortholog Locus:PA3837
Sequence Length:891
Protein Length:296
Start: 1227752
Stop: 1226862
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07224.1|AE004801_2 (AE004801) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 296/296 (100%), Positives = 296/296 (100%)
Sequence:
ATGTCTCTGTTTTCCCTGTTCGGTGCCCTGGAGATCGGCCTGATCTTCAGCCTCGTGGCACTCGGCGTATTC
ATCTCCTTCCGCCTGCTGCGCTTCCCCGACCTCACGGTGGACGGCAGCTTCCCGCTCGGCGGCGCGGTCTGC
GCGACCCTCATCGCCCTCGGCTGGGACCCGTACAGCGCGACCCTGGCGGCCACCGCAGCCGGCGCACTGGCC
GGGCTGGCCACCGGCCTGCTCAACGTCAAGCTGAAGATCATGGACCTGCTCGCCAGCATCCTGATGATGATC
GCGCTCTACTCGATCAACCTGCGCATCATGGGCAAGCCCAACGTACCGCTGATCGCCGAGCCGACATTGTTC
ACCCTGCTGCAGCCGGAATGGCTCAGCGACTACGTGTTCCGCCCGCTGCTGCTGGTGTTCATCGTGATCGCC
GCGAAGCTGCTGCTGGACTGGTTCTTCACCACCCAGAAAGGCCTGGCGATCCGCGCCACCGGCTCCAACCCG
CGGATGGCCCGTGCCCAGGGGGTCAACACCGGCGGCATGATCCTGCTCGGCATGGCCATCTCCAACGCGCTG
GTGGCGTTGGCCGGCGCGCTGTTCGCGCAGACCCAGGGCGGCGCCGATATCTCCATGGGTATCGGCACCATC
GTCATCGGCCTGGCCGCGGTGATCGTCGGCGAGAGCATCCTGCCCTCGCGCCGGCTGATCCTGGCGACCCTC
GCGGTGATCCTCGGCGCCATCGTCTACCGCTTCTTCATCGCCCTGGCGCTGAACAGCGATTTCATCGGCTTG
CAGGCCCAGGACCTGAACCTGGTCACCGCGGTGCTGGTCACCGTCGCCCTGGTGATTCCGATGATGAAGAAA
CGCCTGCTCGGCAAGAAGGGAGCCTGA
Translation:
MSLFSLFGALEIGLIFSLVALGVFISFRLLRFPDLTVDGSFPLGGAVCATLIALGWDPYSATLAATAAGALA
GLATGLLNVKLKIMDLLASILMMIALYSINLRIMGKPNVPLIAEPTLFTLLQPEWLSDYVFRPLLLVFIVIA
AKLLLDWFFTTQKGLAIRATGSNPRMARAQGVNTGGMILLGMAISNALVALAGALFAQTQGGADISMGIGTI
VIGLAAVIVGESILPSRRLILATLAVILGAIVYRFFIALALNSDFIGLQAQDLNLVTAVLVTVALVIPMMKK
RLLGKKGA*
AnnotationID:2801GeneID:2793
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:39
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane component of ABC transporte
Cell Localization:()
Synonyms:PA3837
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33847.1| (BX640447) putative transmembrane component of ABC transporter
           [Bordetella bronchiseptica]
          Length = 296

 Score =  484 bits (1247), Expect = e-136
 Identities = 251/296 (84%), Positives = 275/296 (92%)

>gb|AAN30945.1|AE014493_6 (AE014493) branched-chain amino acid ABC transporter, permease
           protein [Brucella suis 1330]
          Length = 294

 Score =  310 bits (795), Expect = 5e-84
 Identities = 160/290 (55%), Positives = 217/290 (74%), Gaps = 3/290 (1%)








 
Structural Features:
COG4120, ABC-type uncharacterized transport system, permease component 
CD-Length = 293 residues,  99.0% aligned
Score =  327 bits (840), Expect = 2e-90
Identities = 192/293 (65%), Positives = 233/293 (79%), Gaps = 3/293 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22733




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31722




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2793_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2793
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4536
                           PA3837_tr
                           translation of PA3837
                           296
                           99.99
                           99.99
                           0
                           1435.0
     

     
     
130547
                           gb|AAG07224.1|AE004801_2
                           (AE004801) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           296
                           99.99
                           99.99
                           0
                           1435.0
     

     
     
130548
                           emb|CAE33847.1|
                           (BX640447) putative transmembrane component of ABC transporter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           296
                           84.79
                           92.90
                           0
                           1247.0
     

     
     
130549
                           emb|CAE37054.1|
                           (BX640428) putative transmembrane component of ABC transporter [Bordetella parapertussis]
                           296
                           84.45
                           92.56
                           0
                           1241.0
     

     
     
130550
                           emb|CAD15441.1|
                           (AL646066) PUTATIVE TRANSMEMBRANE ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           303
                           72.93
                           86.13
                           7
                           1119.0
     

     






      

          
GC ORFID: 45795How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3837Glimmer Score: 

          
Start: 3726186Stop: 3727076

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3837 translation of PA3837Homolog Bit Score 557.0

          
Other Homologs:  t_PA3837 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTCTGTTTTCCCTGTTCGGTGCCCTGGAGATCGGCCTGATCTTCAGCCTCGTGGCACTCGGCGTATTC 
ATCTCCTTCCGCCTGCTGCGCTTCCCCGACCTCACGGTGGACGGCAGCTTCCCGCTCGGCGGCGCGGTCTGC 
GCGACCCTCATCGCCCTCGGCTGGGACCCGTACAGCGCGACCCTGGCGGCCACCGCAGCCGGCGCACTGGCC 
GGGCTGGCCACCGGCCTGCTCAACGTCAAGCTGAAGATCATGGACCTGCTCGCCAGCATCCTGATGATGATC 
GCGCTCTACTCGATCAACCTGCGCATCATGGGCAAGCCCAACGTACCGCTGATCGCCGAGCCGACATTGTTC 
ACCCTGCTGCAGCCGGAATGGCTCAGCGACTACGTGTTCCGCCCGCTGCTGCTGGTGTTCATCGTGATCGCC 
GCGAAGCTGCTGCTGGACTGGTTCTTCACCACCCAGAAAGGCCTGGCGATCCGCGCCACCGGCTCCAACCCG 
CGGATGGCCCGTGCCCAGGGGGTCAACACCGGCGGCATGATCCTGCTCGGCATGGCCATCTCCAACGCGCTG 
GTGGCGTTGGCCGGCGCGCTGTTCGCGCAGACCCAGGGCGGCGCCGATATCTCCATGGGTATCGGCACCATC 
GTCATCGGCCTGGCCGCGGTGATCGTCGGCGAGAGCATCCTGCCCTCGCGCCGGCTGATCCTGGCGACCCTC 
GCGGTGATCCTCGGCGCCATCGTCTACCGCTTCTTCATCGCCCTGGCGCTGAACAGCGATTTCATCGGCTTG 
CAGGCCCAGGACCTGAACCTGGTCACCGCGGTGCTGGTCACCGTCGCCCTGGTGATTCCGATGATGAAGAAA 
CGCCTGCTCGGCAAGAAGGGAGCCTGA