ViewGene
Locus Name:
GeneID:
Location:

GeneID:2792
TrivialName: PA14_21940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21940
PAO1 Ortholog Locus:PA3251
Sequence Length:810
Protein Length:269
Start: 1909495
Stop: 1908686
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06639.1|AE004747_12 (AE004747) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 267/269 (99%), Positives = 268/269 (99%)
Sequence:
ATGCGCCACGACGTCATCCTCGTCCTGCTGGACGGCCTCAACCACAGCGTCGCCCGCGACTGCATGGGGCAT
CTCCAGGCCCTCTGCGGCGCCGGCCGCGGCCAGTCGTACCGCCTGGAATGCGAGTTGCCTTCGCTGTCCCGG
CCGCTCTACGAATGTATCCTCACCGGAGTGCCGCCGATCGATAGCGGCATCCTGCACAACGACGTGGTCCGC
CTGAGCCAGGAACAGAGCCTGTTCCACTATGCCCGCGCGGCCGGCCTGAGTACCGCGGCAGCGGCCTACCAC
TGGGTCAGCGAACTGTACAACCGCACGCCGTTCGACCCGGCCCGCGACCGCCACACCGACGACAGCGCACTG
CCGATCCAGCGCGGACACTTCTACTGGAACGACCACTATCCGGACTCGCACCTGTTCGCCGATGCGGAAAGC
CTGCGCCGCCGGCACGCACCGAACTTCATGCTGGTCCACTCGATGAACATCGACGACGCCGGGCACAGGCAC
GGCCTCGCCAGCCCCGCCTACCGCAACGCCGCGCGGCGCGCCGACGCGCTGCTGTCGGAATACCTGCACCAG
TGGCTGGCGGCCGGCTACCAGGTGGCGATCACCGCCGATCACGGAATGAACGAGGACCGCAGCCACGGCGGC
ATCCTCGAGGAGGAGCGCGAGGTGCCGCTGTTCGTCTTCGGCGACGCCTTCAGCCGCGACGACCTGGCGCAA
CCGCTGCAGACCGACCTCTGCGGCACGCTCTGCGAAATCCTCGGCGCCGCCCACGACAAACCCGTCTGCCGG
GAGCTGCTCGCCCCATGA
Translation:
MRHDVILVLLDGLNHSVARDCMGHLQALCGAGRGQSYRLECELPSLSRPLYECILTGVPPIDSGILHNDVVR
LSQEQSLFHYARAAGLSTAAAAYHWVSELYNRTPFDPARDRHTDDSALPIQRGHFYWNDHYPDSHLFADAES
LRRRHAPNFMLVHSMNIDDAGHRHGLASPAYRNAARRADALLSEYLHQWLAAGYQVAITADHGMNEDRSHGG
ILEEEREVPLFVFGDAFSRDDLAQPLQTDLCGTLCEILGAAHDKPVCRELLAP*
AnnotationID:2800GeneID:2792
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3251
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5587




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32292




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2792_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2792
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4535
                           PA3251_tr
                           translation of PA3251
                           269
                           99.25
                           99.62
                           0
                           1436.0
     

     
     
130542
                           gb|AAG06639.1|AE004747_12
                           (AE004747) hypothetical protein PA3251 [Pseudomonas aeruginosa PAO1]
                           269
                           99.25
                           99.62
                           0
                           1436.0
     

     
     
130544
                           gb|AAN67346.1|AE016360_12
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           279
                           69.89
                           78.49
                           11
                           1061.0
     

     
     
130543
                           gb|AAO57345.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           288
                           68.40
                           78.12
                           20
                           1078.0
     

     
     
130545
                           dbj|BAC61696.1|
                           (AP005085) hypothetical protein [Vibrio parahaemolyticus]
                           275
                           58.90
                           73.45
                           7
                           868.0
     

     






      

          
GC ORFID: 45794How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3251Glimmer Score: 

          
Start: 3044436Stop: 3045245

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3251 translation of PA3251Homolog Bit Score 557.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2677 (ORF: BLASTX 420.0), t_PA3251 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCACGACGTCATCCTCGTCCTGCTGGACGGCCTCAACCACAGCGTCGCCCGCGACTGCATGGGGCAT 
CTCCAGGCCCTCTGCGGCGCCGGCCGCGGCCAGTCGTACCGCCTGGAATGCGAGTTGCCTTCGCTGTCCCGG 
CCGCTCTACGAATGTATCCTCACCGGAGTGCCGCCGATCGATAGCGGCATCCTGCACAACGACGTGGTCCGC 
CTGAGCCAGGAACAGAGCCTGTTCCACTATGCCCGCGCGGCCGGCCTGAGTACCGCGGCAGCGGCCTACCAC 
TGGGTCAGCGAACTGTACAACCGCACGCCGTTCGACCCGGCCCGCGACCGCCACACCGACGACAGCGCACTG 
CCGATCCAGCGCGGACACTTCTACTGGAACGACCACTATCCGGACTCGCACCTGTTCGCCGATGCGGAAAGC 
CTGCGCCGCCGGCACGCACCGAACTTCATGCTGGTCCACTCGATGAACATCGACGACGCCGGGCACAGGCAC 
GGCCTCGCCAGCCCCGCCTACCGCAACGCCGCGCGGCGCGCCGACGCGCTGCTGTCGGAATACCTGCACCAG 
TGGCTGGCGGCCGGCTACCAGGTGGCGATCACCGCCGATCACGGAATGAACGAGGACCGCAGCCACGGCGGC 
ATCCTCGAGGAGGAGCGCGAGGTGCCGCTGTTCGTCTTCGGCGACGCCTTCAGCCGCGACGACCTGGCGCAA 
CCGCTGCAGACCGACCTCTGCGGCACGCTCTGCGAAATCCTCGGCGCCGCCCACGACAAACCCGTCTGCCGG 
GAGCTGCTCGCCCCATGA