ViewGene
Locus Name:
GeneID:
Location:

GeneID:2791
TrivialName: PA14_43580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43580
PAO1 Ortholog Locus:PA1619
Sequence Length:825
Protein Length:274
Start: 3880571
Stop: 3879747
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05008.1|AE004589_11 (AE004589) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 271/274 (98%), Positives = 273/274 (99%)
Sequence:
ATGGAGCAGATCACCCATCTCAGCAGCGGGATTCCCGGCGTACGCCTGATCGACGCCGAGCACAACCGCTTT
TCCTTTCCCCGGCACTTCCACCTGGAGTACCACATCGGCTTGCTGCTGCAGGGCCGGCATCGCTATGCCGCC
GGCGGCGAACGGCGCCTGGCCGGGGCCGGCGACGCGTTGCTGATGGCGCCGGAAAGCATCCACGACGGCAGC
AGCGCCGGCGAGGAGGGCTACCGTATCCGCGTCCTGGCGCTCGATGCCGACTGGCTGGAGCGCGCCAGCCGC
GACTTCAGCGACGGCCGCCGGGGGGCGCCGCGCCTGACCAGCAGCCTGGTCCGCGACGAGCGTCTGCAGCAG
CGCCTGCGTCAGTTGCACCTGGGCATGCTCGGCGGAGCGGCGGCGCTGGAGAACCGTCTGGCCCTGGAAGAG
CACCTCTGGCAGGCGCTGGCCTGCCTGCTCAGCCTGGGCAGCAGCCTGCGCCTGGAGGAGGGCGACCGGGAA
GGCTTCGGCCAGCGCGACTGGACGCGGCTGCGCGACTGGCTGGAGTCGCGCCTGGAGTACCCGCCGAACCTG
GAGGAACTGGCCGCCTTCTGCGGCCTGAGCCCCTGGCAGGCGCTGCGGCGCTTCCGCCGTCACTGTGGCCTG
CCGCCCCACCAGTGGCTGACCCAACTGCGTCTGGAGCGCGCCTTGCCGCTGGTACTGCGCGGCGAGCAGCCG
TTGAGCCAGGTGGCCCAGCAGTTCGGTTTCTACGACCAGGCGCACTTCAGCCGTCTGTTCCGTCGCACCTAC
GGGTTACCGCCGGCGCGCCTGCGCCAGCGCTGA
Translation:
MEQITHLSSGIPGVRLIDAEHNRFSFPRHFHLEYHIGLLLQGRHRYAAGGERRLAGAGDALLMAPESIHDGS
SAGEEGYRIRVLALDADWLERASRDFSDGRRGAPRLTSSLVRDERLQQRLRQLHLGMLGGAAALENRLALEE
HLWQALACLLSLGSSLRLEEGDREGFGQRDWTRLRDWLESRLEYPPNLEELAAFCGLSPWQALRRFRRHCGL
PPHQWLTQLRLERALPLVLRGEQPLSQVAQQFGFYDQAHFSRLFRRTYGLPPARLRQR*
AnnotationID:2799GeneID:2791
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 10:10:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1619
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,pfam02311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF93368.1| (AE004109) transcriptional regulator, AraC/XylS family [Vibrio
           cholerae]
          Length = 270

 Score =  171 bits (433), Expect = 4e-42
 Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 8/269 (2%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 85.3 bits (211), Expect = 7e-18
Identities = 31/84 (36%), Positives = 50/84 (59%)

pfam02311, AraC_binding, AraC-like ligand binding domain.
CD-Length = 140 residues,  98.6% aligned
Score = 81.7 bits (201), Expect = 8e-17
Identities = 52/144 (36%), Positives = 66/144 (45%), Gaps = 6/144 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22729




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36512




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2791_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2791
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4534
                           PA1619_tr
                           translation of PA1619
                           274
                           98.90
                           99.63
                           0
                           1435.0
     

     
     
130541
                           gb|AAG05008.1|AE004589_11
                           (AE004589) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           274
                           98.90
                           99.63
                           0
                           1435.0
     

     






      

          
GC ORFID: 45793How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1619Glimmer Score: 

          
Start: 1073338Stop: 1074162

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1619 translation of PA1619Homolog Bit Score 557.0

          
Other Homologs:  t_PA1619 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCAGATCACCCATCTCAGCAGCGGGATTCCCGGCGTACGCCTGATCGACGCCGAGCACAACCGCTTT 
TCCTTTCCCCGGCACTTCCACCTGGAGTACCACATCGGCTTGCTGCTGCAGGGCCGGCATCGCTATGCCGCC 
GGCGGCGAACGGCGCCTGGCCGGGGCCGGCGACGCGTTGCTGATGGCGCCGGAAAGCATCCACGACGGCAGC 
AGCGCCGGCGAGGAGGGCTACCGTATCCGCGTCCTGGCGCTCGATGCCGACTGGCTGGAGCGCGCCAGCCGC 
GACTTCAGCGACGGCCGCCGGGGGGCGCCGCGCCTGACCAGCAGCCTGGTCCGCGACGAGCGTCTGCAGCAG 
CGCCTGCGTCAGTTGCACCTGGGCATGCTCGGCGGAGCGGCGGCGCTGGAGAACCGTCTGGCCCTGGAAGAG 
CACCTCTGGCAGGCGCTGGCCTGCCTGCTCAGCCTGGGCAGCAGCCTGCGCCTGGAGGAGGGCGACCGGGAA 
GGCTTCGGCCAGCGCGACTGGACGCGGCTGCGCGACTGGCTGGAGTCGCGCCTGGAGTACCCGCCGAACCTG 
GAGGAACTGGCCGCCTTCTGCGGCCTGAGCCCCTGGCAGGCGCTGCGGCGCTTCCGCCGTCACTGTGGCCTG 
CCGCCCCACCAGTGGCTGACCCAACTGCGTCTGGAGCGCGCCTTGCCGCTGGTACTGCGCGGCGAGCAGCCG 
TTGAGCCAGGTGGCCCAGCAGTTCGGTTTCTACGACCAGGCGCACTTCAGCCGTCTGTTCCGTCGCACCTAC 
GGGTTACCGCCGGCGCGCCTGCGCCAGCGCTGA