ViewGene
Locus Name:
GeneID:
Location:

GeneID:2790
TrivialName: PA14_55150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55150
PAO1 Ortholog Locus:PA0708
Sequence Length:855
Protein Length:284
Start: 4898284
Stop: 4899138
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04097.1|AE004506_7 (AE004506) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 280/284 (98%), Positives = 280/284 (98%)
Sequence:
GTGAAACTCTCTCAACTCGGATTCTTCTGCGCGGTGGTCGAACGCGGCACCATCGCAGCCGCGGCCGAACAG
TTGCATTGCGTGCCGTCGAACATCACTACCCGCTTGCGCGAACTCGAAGGACAACTCGGTGTAGCCCTGTTC
AATCGCGAAAGGAACCGCCTGCTGGTCACCCCCGAGGGCCGCCTGTTGTACCGCCATGCCCGGCGCCTGCTG
GCGCTGGCCGACGAGACCGCCGCGCTGTTCGCCGGCGACCAGGCGCACGGCGCGCTACGGGTCGGCGCACTG
GACGTGGCCCTGGCCAATCACCTGCCCCACCGCCTGGCCCGCTACCGCCGTGAGTCGCCGGGCGTTGAACTG
CACATCCGCCCGGAGCATTCGCTGCTGCTCGAGCGCCTGCTGATGGAGGGAGAGCTGGACCTGATCGTCACC
GACGGCCCCATCGAACACCCGTTGCTGGCCAGCCGCCTGGCCTTCCGCGAGCGCCTGTTGCGGGTCACTCCC
GCCGACCTGCCGGCGCCCACTCCCGAGGACCTCGCCAGCCTCGAACTCTATGTGTTCGGCCACACTTGCCAC
TACCGCCGCCAGGTCGACCGCTGGCTGGCGGAGAGCGGTATCCAGCCGCGGGCAACCCTGGAAATCGAGTCC
TACCCGAGCCTCTTCGCCTGCATCGAGGCCGGTCTCGGCTTCGCCTGCGTGCCGGAGAGCTTCGTTGCACGC
AGGCCCTCCACGCGACGGGGTTTCCATGCCGAACCGGTAGCCGGCCTGGACTCCAGCGATATCCATTTCGTC
TGGCGCAAACAGCAAGCCTCACCGCTGATCCAGGGCTTCATCGACAGCATCGGCGCCGACTGA
Translation:
MKLSQLGFFCAVVERGTIAAAAEQLHCVPSNITTRLRELEGQLGVALFNRERNRLLVTPEGRLLYRHARRLL
ALADETAALFAGDQAHGALRVGALDVALANHLPHRLARYRRESPGVELHIRPEHSLLLERLLMEGELDLIVT
DGPIEHPLLASRLAFRERLLRVTPADLPAPTPEDLASLELYVFGHTCHYRRQVDRWLAESGIQPRATLEIES
YPSLFACIEAGLGFACVPESFVARRPSTRRGFHAEPVAGLDSSDIHFVWRKQQASPLIQGFIDSIGAD*
AnnotationID:2798GeneID:2790
AnnotatorUID: danlee
Modification Date/Time: 2004-03-12 13:01:07
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0708
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
   CD-Length = 297 residues,  96.6% aligned
   Score =  107 bits (267), Expect = 3e-24







   
Genomic Context:






   
Comment:


















    ReferenceID:14669




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2790
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4533
                           PA0708_tr
                           translation of PA0708
                           284
                           98.59
                           98.59
                           0
                           1435.0
     

     
     
130540
                           gb|AAG04097.1|AE004506_7
                           (AE004506) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           284
                           98.23
                           98.59
                           0
                           1432.0
     

     






      

          
GC ORFID: 45792How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0708Glimmer Score: 

          
Start: 55623Stop: 54769

          
Length: 855


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0708 translation of PA0708Homolog Bit Score 557.0

          
Other Homologs:  t_PA0708 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAACTCTCTCAACTCGGATTCTTCTGCGCGGTGGTCGAACGCGGCACCATCGCAGCCGCGGCCGAACAG 
TTGCATTGCGTGCCGTCGAACATCACTACCCGCTTGCGCGAACTCGAAGGACAACTCGGTGTAGCCCTGTTC 
AATCGCGAAAGGAACCGCCTGCTGGTCACCCCCGAGGGCCGCCTGTTGTACCGCCATGCCCGGCGCCTGCTG 
GCGCTGGCCGACGAGACCGCCGCGCTGTTCGCCGGCGACCAGGCGCACGGCGCGCTACGGGTCGGCGCACTG 
GACGTGGCCCTGGCCAATCACCTGCCCCACCGCCTGGCCCGCTACCGCCGTGAGTCGCCGGGCGTTGAACTG 
CACATCCGCCCGGAGCATTCGCTGCTGCTCGAGCGCCTGCTGATGGAGGGAGAGCTGGACCTGATCGTCACC 
GACGGCCCCATCGAACACCCGTTGCTGGCCAGCCGCCTGGCCTTCCGCGAGCGCCTGTTGCGGGTCACTCCC 
GCCGACCTGCCGGCGCCCACTCCCGAGGACCTCGCCAGCCTCGAACTCTATGTGTTCGGCCACACTTGCCAC 
TACCGCCGCCAGGTCGACCGCTGGCTGGCGGAGAGCGGTATCCAGCCGCGGGCAACCCTGGAAATCGAGTCC 
TACCCGAGCCTCTTCGCCTGCATCGAGGCCGGTCTCGGCTTCGCCTGCGTGCCGGAGAGCTTCGTTGCACGC 
AGGCCCTCCACGCGACGGGGTTTCCATGCCGAACCGGTAGCCGGCCTGGACTCCAGCGATATCCATTTCGTC 
TGGCGCAAACAGCAAGCCTCACCGCTGATCCAGGGCTTCATCGACAGCATCGGCGCCGACTGA