ViewGene
Locus Name:
GeneID:
Location:

GeneID:279
TrivialName: PA14_24720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24720
PAO1 Ortholog Locus:PA3044
Sequence Length:2226
Protein Length:741
Start: 2160811
Stop: 2163036
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06432.1|AE004729_6 (AE004729) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 725/741 (97%), Positives = 727/741 (98%)
Sequence:
ATGAAGTTCCAGAAACGCAGTGCGTGCATGCTCGGCCTGTTTCTCGTATTCGCCTGCATGGCGGGATATGCC
GTTCCGGCGAGGGCGACGGCTGGCGAATATTCTTCCCTGCTCCGGATTCCCGCTCCGGATTGCCCGGAGGGC
GCCGATGCGGTCGTCGAAGCGCCGCTACACCAGGCTGCCGACGGGCTGCGCTCGCCGTCCCCTTCCAGCCTG
GTGCTCGGCCTGCTGGTGGCCTGCCTGGTCTGCGTCGGATGCCTGGGCTGGAATACTGTCCTTCAACTCAGG
CTCAGGCGCTGGCAACGTACCGAAGCCGACCTGAGCGGCCGCCTGGCATTGAAGCAGGCGCTGGTCGACGGG
ATTCCCTACCCGGTGAGCATCCGCACGCTCGACGGTCGCCTGCTGGCCTGCAACCGCAATTACCTGGAAAGC
CTGCGGATGACCCGTGAGCAGGCCCGCGGCACCCTGTTGACCGATTCCGACTGGGTCGAGGGCAGCAAGGCA
CGGCTCATGCACCAGCAGTGCCTGGCGGTGGCTCGGGGAGGAACGGCGAGCTTCACCGACATGGCGGTGCGC
ATCGGCGGGCAATTGCTGGAGATCCACCATTGGGTCACGCCCTACAGGGATCGCCAGGGCCGGGTGCTCGGC
CTGATGAACGGCTGGATCGACATCACCGAACGGGAGCGCCTGGCCCGCCAGTTGCGCGAGGCGATGCGCCAG
GCGGGCGAGGCGAATCGGGCGAAGAGCGTCTTCCTGGCGACCATGAGCCACGAGATCCGTACGCCGATGAAT
GCGGTCATCGGCATCCTCGAACTGGTCCTGCAGCGCCTGGCGCCGGAGCAGCGCGAACGCGCCTCGCTGGAG
GTCGCCTACGAGGCTGCGGGGTCGCTGCAACTGCTCATCGGCGACATCCTCGACGTCGCCAAGATCGAGTCC
GGCCACCTGACCCTCACGCCCGAGCGGGTTCGCCTGCGCCATGTCGTGGAGTCGGTGCGCCGCATGTTCGAA
GGCCTGGCCCGGCAGAAAGGCCTGAGGCTCGTTGTGGAGCTGGACGATGCCCCGGGACGGGACGTGCTGATC
GATCCCCTGCGCTTCAAGCAGGTGCTCTCCAACCTGGTGAGCAATGCGATCAAGTTCACCGAGCGGGGACAG
GTGACGATCCGTCTCCAGGAAAGGAGCCTGGACGAGGGGAGGGCGATCGTCCGGGTGGACGTGGAGGATTCC
GGTATCGGTATCGCTCCGGCGGACCAGGCGCGCCTGTTCCAGCCTTTCATCCAGGTGGCCAAGGGACGCACG
GTGCAGGGCGGGACCGGCCTTGGGCTGGCGATCTGTCGGAAGTTGGTGGACCTCATGGGCGGCGATGTCGAG
ATGCACAGCGAGCCGGGCAAAGGCACCCGGGTGTCGCTCGACCTGCTCTTGCGCCAGTGCGGGCCGAAAATG
CCTGAATCCAGCCAGGACCCGCTGGCAGCATCCATGGAGCCGTCTCGCCGCCTGCATATCCTCATCGCCGAC
GACTATCCGCCCAACCGGGTACTGCTGCGCCAGCAACTGGAGTTTCTCGGCCACCGGGTGGCGGAAGCGGAG
GATGGCCAGGTGGCGCTGGAACTCTGGGCCGACGAGCGCTTCGAGGTGCTGATCAGCGACTGCAATATGCCG
CGCCTGAACGGCTATCAGCTGGCACGCAGGATACGCATCCAGGAACGGTGCGAGCGGCGCGCGCCGATCCTG
ATCCTCGGCTATACCGCCGACGCCGAGCCGGACGAGGTACAGCGCTGCCGCGACGCGGGCATGGATGATTGC
CTGTTCAAGCCGCTCGGCCTGGAGACCCTGCGCAACTACCTCGCGACCTCTTTCGGCCGCGACGCCGCGCAG
CCCCGGGGGCTCTATGACGCGGACGCTCTCAGCAGCCTCGGTGGCGGCCGCCCGGAACGGCTGCGCGAACTG
CTGGAGACCCTGCTAGGCAGCAACCGTCAGGACCTCCAGCGCCTTGCCATCCTCCTGCGCGAGGGCGACAGG
ACCCGGCTCGCCGAGCATGCCCACCGCATCAAGGGCGCCGCGCGGATGATCGGGGCGCGTACCCTGCTGGAG
GCCTGCGAGGCCCTGGAGGACGCCTGCCGGCGAGGTGGCGACGGGGAGTGCCTGCAGGCGTCTGGCGAAAGA
CTCCGGCTGGCCCTGGAGGCGTTGCAGGAGGAACTCCAGGAGCAGTTGGCGGCCGCTGCGGTATGA
Translation:
MKFQKRSACMLGLFLVFACMAGYAVPARATAGEYSSLLRIPAPDCPEGADAVVEAPLHQAADGLRSPSPSSL
VLGLLVACLVCVGCLGWNTVLQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLES
LRMTREQARGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLG
LMNGWIDITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLAPEQRERASLE
VAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLARQKGLRLVVELDDAPGRDVLI
DPLRFKQVLSNLVSNAIKFTERGQVTIRLQERSLDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT
VQGGTGLGLAICRKLVDLMGGDVEMHSEPGKGTRVSLDLLLRQCGPKMPESSQDPLAASMEPSRRLHILIAD
DYPPNRVLLRQQLEFLGHRVAEAEDGQVALELWADERFEVLISDCNMPRLNGYQLARRIRIQERCERRAPIL
ILGYTADAEPDEVQRCRDAGMDDCLFKPLGLETLRNYLATSFGRDAAQPRGLYDADALSSLGGGRPERLREL
LETLLGSNRQDLQRLAILLREGDRTRLAEHAHRIKGAARMIGARTLLEACEALEDACRRGGDGECLQASGER
LRLALEALQEELQEQLAAAAV*
AnnotationID:289GeneID:279
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA3044
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative signal transduction histidine kinase
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67714.1|AE016402_6 (AE016781) two-component sensor protein [Pseudomonas putida KT2440]
          Length = 1211

 Score =  530 bits (1366), Expect = e-149
 Identities = 307/648 (47%), Positives = 416/648 (64%), Gaps = 14/648 (2%)

>emb|CAE38319.1| (BX640432) virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  503 bits (1294), Expect = e-141
 Identities = 301/690 (43%), Positives = 419/690 (60%), Gaps = 35/690 (5%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  85.4% aligned
Score =  164 bits (415), Expect = 3e-41
Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 15/335 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17703




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36006




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:279_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:279
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
460
                           PA3044_tr
                           translation of PA3044
                           741
                           97.84
                           98.11
                           0
                           3663.0
     

     
     
24297
                           gb|AAG06432.1|AE004729_6
                           (AE004729) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           741
                           97.84
                           98.11
                           0
                           3663.0
     

     
     
24307
                           gb|AAO55830.1|
                           (AE016864) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           745
                           30.73
                           41.20
                           272
                           1050.0
     

     
     
24298
                           gb|AAG07333.1|AE004812_8
                           (AE004812) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           1221
                           27.84
                           38.65
                           489
                           1445.0
     

     
     
461
                           PA3946_tr
                           translation of PA3946
                           1221
                           27.84
                           38.65
                           489
                           1445.0
     

     






      

          
GC ORFID: 43281How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3044Glimmer Score: 

          
Start: 2793117Stop: 2790892

          
Length: 2226


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3044 translation of PA3044Homolog Bit Score 1415.0

          
Other Homologs:  t_PA3044 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTCCAGAAACGCAGTGCGTGCATGCTCGGCCTGTTTCTCGTATTCGCCTGCATGGCGGGATATGCC 
GTTCCGGCGAGGGCGACGGCTGGCGAATATTCTTCCCTGCTCCGGATTCCCGCTCCGGATTGCCCGGAGGGC 
GCCGATGCGGTCGTCGAAGCGCCGCTACACCAGGCTGCCGACGGGCTGCGCTCGCCGTCCCCTTCCAGCCTG 
GTGCTCGGCCTGCTGGTGGCCTGCCTGGTCTGCGTCGGATGCCTGGGCTGGAATACTGTCCTTCAACTCAGG 
CTCAGGCGCTGGCAACGTACCGAAGCCGACCTGAGCGGCCGCCTGGCATTGAAGCAGGCGCTGGTCGACGGG 
ATTCCCTACCCGGTGAGCATCCGCACGCTCGACGGTCGCCTGCTGGCCTGCAACCGCAATTACCTGGAAAGC 
CTGCGGATGACCCGTGAGCAGGCCCGCGGCACCCTGTTGACCGATTCCGACTGGGTCGAGGGCAGCAAGGCA 
CGGCTCATGCACCAGCAGTGCCTGGCGGTGGCTCGGGGAGGAACGGCGAGCTTCACCGACATGGCGGTGCGC 
ATCGGCGGGCAATTGCTGGAGATCCACCATTGGGTCACGCCCTACAGGGATCGCCAGGGCCGGGTGCTCGGC 
CTGATGAACGGCTGGATCGACATCACCGAACGGGAGCGCCTGGCCCGCCAGTTGCGCGAGGCGATGCGCCAG 
GCGGGCGAGGCGAATCGGGCGAAGAGCGTCTTCCTGGCGACCATGAGCCACGAGATCCGTACGCCGATGAAT 
GCGGTCATCGGCATCCTCGAACTGGTCCTGCAGCGCCTGGCGCCGGAGCAGCGCGAACGCGCCTCGCTGGAG 
GTCGCCTACGAGGCTGCGGGGTCGCTGCAACTGCTCATCGGCGACATCCTCGACGTCGCCAAGATCGAGTCC 
GGCCACCTGACCCTCACGCCCGAGCGGGTTCGCCTGCGCCATGTCGTGGAGTCGGTGCGCCGCATGTTCGAA 
GGCCTGGCCCGGCAGAAAGGCCTGAGGCTCGTTGTGGAGCTGGACGATGCCCCGGGACGGGACGTGCTGATC 
GATCCCCTGCGCTTCAAGCAGGTGCTCTCCAACCTGGTGAGCAATGCGATCAAGTTCACCGAGCGGGGACAG 
GTGACGATCCGTCTCCAGGAAAGGAGCCTGGACGAGGGGAGGGCGATCGTCCGGGTGGACGTGGAGGATTCC 
GGTATCGGTATCGCTCCGGCGGACCAGGCGCGCCTGTTCCAGCCTTTCATCCAGGTGGCCAAGGGACGCACG 
GTGCAGGGCGGGACCGGCCTTGGGCTGGCGATCTGTCGGAAGTTGGTGGACCTCATGGGCGGCGATGTCGAG 
ATGCACAGCGAGCCGGGCAAAGGCACCCGGGTGTCGCTCGACCTGCTCTTGCGCCAGTGCGGGCCGAAAATG 
CCTGAATCCAGCCAGGACCCGCTGGCAGCATCCATGGAGCCGTCTCGCCGCCTGCATATCCTCATCGCCGAC 
GACTATCCGCCCAACCGGGTACTGCTGCGCCAGCAACTGGAGTTTCTCGGCCACCGGGTGGCGGAAGCGGAG 
GATGGCCAGGTGGCGCTGGAACTCTGGGCCGACGAGCGCTTCGAGGTGCTGATCAGCGACTGCAATATGCCG 
CGCCTGAACGGCTATCAGCTGGCACGCAGGATACGCATCCAGGAACGGTGCGAGCGGCGCGCGCCGATCCTG 
ATCCTCGGCTATACCGCCGACGCCGAGCCGGACGAGGTACAGCGCTGCCGCGACGCGGGCATGGATGATTGC 
CTGTTCAAGCCGCTCGGCCTGGAGACCCTGCGCAACTACCTCGCGACCTCTTTCGGCCGCGACGCCGCGCAG 
CCCCGGGGGCTCTATGACGCGGACGCTCTCAGCAGCCTCGGTGGCGGCCGCCCGGAACGGCTGCGCGAACTG 
CTGGAGACCCTGCTAGGCAGCAACCGTCAGGACCTCCAGCGCCTTGCCATCCTCCTGCGCGAGGGCGACAGG 
ACCCGGCTCGCCGAGCATGCCCACCGCATCAAGGGCGCCGCGCGGATGATCGGGGCGCGTACCCTGCTGGAG 
GCCTGCGAGGCCCTGGAGGACGCCTGCCGGCGAGGTGGCGACGGGGAGTGCCTGCAGGCGTCTGGCGAAAGA 
CTCCGGCTGGCCCTGGAGGCGTTGCAGGAGGAACTCCAGGAGCAGTTGGCGGCCGCTGCGGTATGA